Platypus
Platypus Variant Caller
파일 탐색기
최종 버전 다운로드 (.zip)- somaticMutationDetector.py
- bayesianDeNovoFilter.py
- NA.ped
- NA12878_Trio_chr20.vcf
- HowToRunValgrind.txt
- README.txt
- valgrind-python.supp
- Platypus_0.1.1.tgz
- Platypus_0.1.2.tgz
- Platypus_0.1.3.tgz
- Platypus_0.1.4.tgz
- Platypus_0.1.5.tgz
- Platypus_0.1.6.tgz
- Platypus_0.1.7.tgz
- Platypus_0.1.8.tgz
- Platypus_0.1.9.tgz
- Platypus_0.1.tgz
- Platypus_0.2.0.tgz
- Platypus_0.2.1.tgz
- Platypus_0.2.3.tgz
- Platypus_0.4.tgz
- Platypus_0.5.1.tgz
- Platypus_0.5.2.tgz
- Platypus_0.7.0.tgz
- Platypus_0.7.1.tgz
- Platypus_0.7.3.tgz
- Platypus_0.7.4.tgz
- Platypus_0.7.5.tgz
- Platypus_0.7.6.tgz
- Platypus_0.7.7.tgz
- Platypus_0.7.8.tgz
- Platypus_0.7.9.1.tgz
- Platypus_0.8.1.tgz
- buildPlatypus.sh
- setup.py
- annotatePalindromes.py
- binIndelRatioByHP.py
- binIndelRatioByPal.py
- binTsTvByHP.py
- binTsTvByPal.py
- computeIndelRatio.py
- computePhaseOneMembership.py
- computeTsTv.py
- countAlus.sh
- countBrokenPairs.py
- countClusters.py
- countRefAndNonRefChars.py
- filterClusters.py
- filterGOF.py
- filterHP.py
- filterJoiningHPs.py
- filterOneSidedHP.py
- filterPal.py
- filterReadThrough.py
- filterSnpDirection.py
- filterTotCoverage.py
- filterTR.py
- filterTU.py
- filterTwoSidedHP.py
- filterVarCoverage.py
- filterVarFreq.py
- findDeNovoMutations.py
- findSomaticMutationsInTumour.py
- hist.py
- keepGof.py
- markClusters.py
- palindrome.c
- palindrome.pyx
- plotGOF.py
- plotInfo.py
- plotVarDensity.py
- printCortexOnlyCalls.py
- printLRHpCounts.py
- printQuals.py
- removeClusters.py
- removeHomopolymers.py
- removeJoiningHPs.py
- removeTandems.py
- removeTandemsAndHPs.py
- runSamtools.sh
- setup.py
- splitMNPsAndComplex.py
- vcfChecks.py
- align.c
- align.h
- pysam_util.c
- pysam_util.h
- tandem.c
- tandem.h
- vec128int.h
- vec128int.h.old
- veclib_types.h
- arrays.pxd
- arrays.pyx
- assembler.pxd
- assembler.pyx
- calign.pxd
- calign.pyx
- cerrormodel.pxd
- cerrormodel.pyx
- cgenotype.pxd
- cgenotype.pyx
- chaplotype.pxd
- chaplotype.pyx
- cpopulation.pxd
- cpopulation.pyx
- cwindow.pxd
- cwindow.pyx
- fastafile.pxd
- fastafile.pyx
- htslibWrapper.pxd
- htslibWrapper.pyx
- platypusutils.pxd
- platypusutils.pyx
- variant.h
- variant.pxd
- variant.pyx
- variantcaller.pyx
- variantFilter.pxd
- variantFilter.pyx
- vcfutils.pxd
- vcfutils.pyx
- COPYING
- ctabix.c
- ctabix.pxd
- ctabix.pyx
- tabix_util.c
- TabProxies.c
- TabProxies.pxd
- TabProxies.pyx
- THANKS
- extendedoptparse.py
- filez.py
- graph.py
- indelerrormodel.py
- lowcov.py
- Platypus.py
- platypusexceptions.py
- runner.py
- variantutils.py
- vcf.py
- window.py
- bam_endian.h
- bedidx.c.pysam.c
- bgzf.c.pysam.c
- bgzf.h
- bgzip.c.pysam.c
- index.c.pysam.c
- khash.h
- knetfile.c.pysam.c
- knetfile.h
- kseq.h
- ksort.h
- ksort_proxy.c
- ksort_proxy.o
- kstring.c.pysam.c
- kstring.h
- pysam.h
- tabix.h
- setup.py
- HLA_A_alignment_hapsREF.vcf.gz
- HLA_A_alignment_hapsREF.vcf.gz.tbi
- S55_test_realigned.bam
- S55_test_realigned.bam.bai
- .DS_Store
- .gitignore
- .travis.yml
- Dockerfile
- LICENSE
- Makefile
- README.md
- requirements.txt
- sanityChecks.py
// repository documentation
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