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Source code for the EDJNET story about PM2P5 air pollution levels on Europe

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// repository documentation

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# Air Pollution in Europe

This repository contains the code and a brief methodological description of data analysis behind [this](https://www.dw.com/en/air-pollution-nearly-everyone-in-europe-breathing-bad-air/a-66657048) piece, which was published by DW and the collaborators from the European Data Journalism Network.

Data analysis and reporting by Rodrigo Menegat Schuinski.
Story edited by Gianna G. Grün and Zulfikar Abbany.

—

## Methodology
The pollution figures on this story are the result of an DW Data analysis that used data provided by the Copernicus satellite system. Satellite pollution measurements are made using light sensors. The more polluted an area is, the less light is reflected from the ground back to the satellite. This difference, coupled with statistical modeling and other adjustments, allows scientists to estimate how polluted an area on Earth's surface is.

This kind of data is specially useful for measuring pollution levels even in areas where air pollution sensors are few and far between. Such sensors are sparser in parts of the globe such as Africa and South America, but this is also the case in some areas of Europe as well. Nevertheless, this approach is considered less precise than using measurements made with on-the-ground sensors.

Satellite observations also cram together extensive areas into a single observation: each measurement refers to a 10 km² area in the Earth's surface – also known as a satellite's "pixel size". In reality, the conditions on the ground would probably change within such a large territory. Moreover, more precise measurements are generally used in scientific research and when measuring results in order to enforce public policies.

The specific pollution data sources used for this project were the .netcdf raster files from the [Copernicus' European air quality reanalysis dataset](https://ads.atmosphere.copernicus.eu/cdsapp#!/dataset/cams-europe-air-quality-reanalyses), with the exception of any 2023 figures, which come from the equivalent [forecast data](https://ads.atmosphere.copernicus.eu/cdsapp#!/dataset/cams-europe-air-quality-forecasts?tab=overview).

In both cases, the original data showed hourly measurements at the surface level. The hourly data was first summarized into daily averages. The daily averages, on its turn, were averaged into yearly or weekly means, when necessary.

In order to estimate the population exposed to different thresholds of pollution, another satellite-based dataset was used: the [Global Human Settlement Layer (GHSL)](https://ghsl.jrc.ec.europa.eu/), which estimates how many people live in each one of the satellite's pixels.

Since the GHSL's pixel size (that is, the area covered by each data point) is significantly smaller than the pixel size in the pollution datasets, it had to be reprojected – that is, reshaped in order to match the latitudes, longitudes and scale of the Copernicus data.

In practical terms, all the GHSL pixels that intercept a single Copernicus pixel had their population summed proportionally. As a result, each Copernicus pixel ended up associated with an estimate of the population that lived there.

It's important to highlight that GHSL estimates often don't match official census statistics. However, they come close.

In order to estimate average pollution levels for each region or city, we used the European Union's [NUTS statistical division](https://ec.europa.eu/eurostat/web/nuts/background). We selected all the satellite pixels that were within the given unit and averaged them once again.

Each mentioned city in the story is represented by a level 3 NUTS unit – that is, the smallest available statistical division. The pollution levels reported come from the averaging process described above.

A similar process was done to estimate the share of population exposed to each pollution level: for each country, we first selected all the pixels within its boundaries that had pollution levels above a given threshold and summed their population estimates. Like what happens with the satellite pixels, this means that conditions in the ground actually vary within the averaged area, and the reported values are general approximations that cram together different realities for analysis purposes.

For validating this data processing pipeline, the results were compared to data published by the European Environmental Agency in 2020. The overall trend was the same.

## Code structure
The source code available in this repository describes in detail how the process above was carried out.

The directory `downloaders` contains the scripts used to download data from the Copernicus API. Please notice that the data from the GHSL and NUTS shapefiles were downloaded manually and not using any scripts.

The directory `pre-processing` has all the scripts used to prepare the data for the process described above, including unzipping the files and adding other regional divisions of interest to the NUTS shapefiles (namely regional divisions for countries that are still not contemplated in the NUTS statistical division).

The directory `processing` contains the scripts that averaged and reprojected the satellite data and, ultimately, produced CSV files with estimated pollution and population estimates for each NUTS region in different timeframes. Additionally, another script extracted pollution estimates for specific points (city centers), instead of averaging areas, but it wasn't used in this story. Finally, the CSV files are also processed into easier-to-work-with Excel files.

Finally, the `viz` directory contains the scripts used to generate the maps shown in the piece, as well as another set of CSV files which powersed the charts made with [Datawrapper]([https://www.datawrapper.de/).

## Access to processed data
The Excel files available in the `output` directory are the result of the process described above, with country and NUTS3-level estimates on pollution.

The processed pixel-level data was too large to be published on GitHub, but if you are interested in them, please email data.team[at]dw.com.

Similarly, the source data was also too large to be uploaded, but it can be found in the hyperlinks in the methodology section.

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