pyhmmer
Cython bindings and Python interface to HMMER3.
파일 탐색기
최종 버전 다운로드 (.zip)- package.yml
- requirements.txt
- test.yml
- hmmsearch.json
- nhmmer.json
- phmmer.json
- plot.svg
- hmmsearch.json
- nhmmer.json
- phmmer.json
- plot.svg
- hmmsearch.json
- phmmer.json
- plot.svg
- hmmsearch.json
- phmmer.json
- plot.svg
- progenomes.svg
- progenomes.tsv
- hmmsearch.json
- phmmer.json
- plot.svg
- progenomes.svg
- progenomes.tsv
- hmmsearch.json
- nhmmer.json
- phmmer.json
- plot.svg
- hmmsearch.json
- nhmmer.json
- phmmer.json
- plot.svg
- hmmsearch.json
- nhmmer.json
- phmmer.json
- plot.svg
- hmmsearch.json
- nhmmer.json
- phmmer.json
- plot.svg
- latest
- plot.py
- run.sh
- bench-v0.11.1.svg
- bench-v0.3.0.svg
- bench-v0.4.0.svg
- bench-v0.4.5.svg
- bench-v0.5.0.svg
- bench-v0.7.0.svg
- favicon.ico
- logo.png
- progenomes-v0.4.0.svg
- progenomes-v0.4.5.svg
- citation.bib
- custom.css
- main.css
- apitoc.js
- custom-icon.js
- example-admonition.js
- summary.rst
- client.rst
- index.rst
- alphabet.rst
- block.rst
- data.rst
- index.rst
- linalg.rst
- misc.rst
- msa.rst
- parsers.rst
- seq.rst
- index.rst
- mem.rst
- runtime.rst
- value.rst
- index.rst
- iter.rst
- profile.rst
- seq.rst
- utils.rst
- hmms.rst
- index.rst
- iter.rst
- misc.rst
- parsers.rst
- pli.rst
- results.rst
- traces.rst
- index.rst
- .gitignore
- active_site.ipynb
- active_site.png
- data
- embed_hmms.rst
- fetchmgs.ipynb
- index.rst
- iterative_search.ipynb
- msa_to_hmm.ipynb
- performance_tips.ipynb
- recipes.ipynb
- benchmarks.rst
- changes.md
- contributing.md
- copyright.rst
- index.rst
- install.rst
- performance.rst
- publications.rst
- significance.rst
- windows.rst
- .gitignore
- conf.py
- index.rst
- make.bat
- Makefile
- requirements.txt
- __init__.pxd
- a2m.pxd
- afa.pxd
- clustal.pxd
- phylip.pxd
- psiblast.pxd
- selex.pxd
- stockholm.pxd
- __init__.pxd
- ascii.pxd
- ncbi.pxd
- __init__.pxd
- alloc.pxd
- alphabet.pxd
- arr2.pxd
- arr3.pxd
- avx.pxd
- avx512.pxd
- bitfield.pxd
- buffer.pxd
- cluster.pxd
- composition.pxd
- cpu.pxd
- dirichlet.pxd
- distance.pxd
- dmatrix.pxd
- dsqdata.pxd
- exponential.pxd
- fileparser.pxd
- gamma.pxd
- gencode.pxd
- getopts.pxd
- gev.pxd
- graph.pxd
- gumbel.pxd
- heap.pxd
- histogram.pxd
- hmm.pxd
- huffman.pxd
- hyperexp.pxd
- json.pxd
- keyhash.pxd
- matrixops.pxd
- mem.pxd
- minimizer.pxd
- mixdchlet.pxd
- mixgev.pxd
- msa.pxd
- msacluster.pxd
- msaweight.pxd
- rand64.pxd
- random.pxd
- scorematrix.pxd
- sq.pxd
- ssi.pxd
- vec.pxd
- __init__.pxd
- io.pxd
- p7_omx.pxd
- p7_oprofile.pxd
- __init__.pxd
- io.pxd
- p7_omx.pxd
- p7_oprofile.pxd
- __init__.pxd
- io.pxd
- p7_omx.pxd
- p7_oprofile.pxd
- __init__.pxd
- io.pxd
- p7_omx.pxd
- p7_oprofile.pxd
- __init__.pxd
- emit.pxd
- fm.pxd
- generic.pxd
- h2_io.pxd
- hmmpgmd.pxd
- logsum.pxd
- modelconfig.pxd
- modelstats.pxd
- nhmmer.pxd
- p7_alidisplay.pxd
- p7_bg.pxd
- p7_builder.pxd
- p7_domain.pxd
- p7_domaindef.pxd
- p7_gmx.pxd
- p7_hit.pxd
- p7_hmm.pxd
- p7_hmmfile.pxd
- p7_pipeline.pxd
- p7_prior.pxd
- p7_profile.pxd
- p7_scoredata.pxd
- p7_spensemble.pxd
- p7_tophits.pxd
- p7_trace.pxd
- tracealign.pxd
- capacity.pxd
- pthread_mutex.pxd
- unicode.pxd
- p7_omx.c.patch
- p7_oprofile.c.patch
- easel.c.patch
- easel.h.patch
- esl_buffer.c.patch
- esl_dsqdata.c.patch
- esl_sq.c.patch
- esl_sqio_ascii.c.patch
- esl_sqio_ascii.h.patch
- esl_threads.h.patch
- fm_general.c.patch
- fm_sse.c.patch
- hmmer.h.patch
- p7_hmm.c.patch
- p7_hmmfile.c.patch
- p7_tophits.c.patch
- PKGBUILD.in
- CMakeLists.txt
- PyHMMERConfig.cmake.in
- CMakeLists.txt
- esl_config.h.cmake
- CMakeLists.txt
- p7_config.h.cmake
- __init__.py
- _base.py
- _hmmalign.py
- _hmmpress.py
- _hmmscan.py
- _hmmsearch.py
- _jackhmmer.py
- _nhmmer.py
- _phmmer.py
- __init__.pxd
- bsd.h
- bsd.pxd
- bsd.pyx
- CMakeLists.txt
- linux.h
- linux.pxd
- linux.pyx
- util.h
- win32.pxd
- win32.pyx
- PF02826.h3m
- RF00001.h3m
- RREFam.h3m
- Thioesterase.h3m
- PF02826.hmm
- PF02826.hmm.h3f
- PF02826.hmm.h3i
- PF02826.hmm.h3m
- PF02826.hmm.h3p
- RREFam.hmm
- RREFam.hmm.h3f
- RREFam.hmm.h3i
- RREFam.hmm.h3m
- RREFam.hmm.h3p
- Thioesterase.hmm
- Thioesterase.hmm.h3f
- Thioesterase.hmm.h3i
- Thioesterase.hmm.h3m
- Thioesterase.hmm.h3p
- bmyD.hmm
- KR.hmm
- LuxC.hmm
- PF02826.hmm
- RF00001.hmm
- RREFam.hmm
- Thioesterase.hmm
- RREFam.hmm2
- Thioesterase.hmm2
- make.sh
- KR-1.sto
- KR-1_bkup.sto
- KR-2.sto
- KR-3.sto
- KR-4.sto
- KR-5.sto
- KR-6.sto
- p12748-1.sto
- p12748-2.sto
- p12748-3.sto
- LuxC.faa
- LuxC.hmmalign.sto
- LuxC.sto
- LuxC.sto.ssi
- LuxC.weighted.sto
- 1390.SAMEA104415756.OFHT01000022.fna
- 1390.SAMEA104415756.OFHT01000024.fna
- 938293.PRJEB85.HG003687.faa
- 938293.PRJEB85.HG003687.faa.ssi
- BGC0001090.gbk
- bmyD.fna
- CP040672.1.genes_100.fna
- LuxC.faa
- PKSI.faa
- A0A089QRB9.domtbl
- bmyD1.tbl
- bmyD2.tbl
- bmyD3.tbl
- PF02826.domtbl
- PF02826.tbl
- RREFam.domtbl
- RREFam.scan.tbl
- RREFam.tbl
- README.md
- __init__.py
- test_alphabet.py
- test_bitfield.py
- test_block.py
- test_gencode.py
- test_keyhash.py
- test_matrix.py
- test_msa.py
- test_msafile.py
- test_randomness.py
- test_sequence.py
- test_sequencefile.py
- test_ssi.py
- test_vector.py
- __init__.py
- test_alignment.py
- test_background.py
- test_block.py
- test_builder.py
- test_hit.py
- test_hmm.py
- test_hmmfile.py
- test_optimizedprofile.py
- test_pipeline.py
- test_profile.py
- test_tophits.py
- test_tracealigner.py
- test_traces.py
- __init__.py
- requirements.txt
- test_doctest.py
- test_errors.py
- test_hmmer.py
- utils.py
- __init__.py
- _getid.pxi
- _strings.pxi
- CMakeLists.txt
- daemon.pxd
- daemon.pyi
- daemon.pyx
- easel.pxd
- easel.pyi
- easel.pyx
- errors.pyi
- errors.pyx
- exceptions.pxi
- plan7.pxd
- plan7.pyi
- plan7.pyx
- py.typed
- utils.py
- CythonExtension.cmake
- Destatic.cmake
- FindAVX2.cmake
- FindNEON.cmake
- FindSSE2.cmake
- FindSSE4.cmake
- FindVMX.cmake
- apply_patch.py
- CMakeLists.txt
- logo.png
- easel
- hmmer
- .gitignore
- .gitmodules
- .readthedocs.yaml
- CHANGELOG.md
- CITATION.cff
- CMakeLists.txt
- CONTRIBUTING.md
- COPYING
- pyproject.toml
- README.md
// repository documentation
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