KO
|
EN
gitlite — search
Search
#javascript
#python
#hacktoberfest
#react
#ai
#typescript
#llm
#go
#golang
#android
#machine-learning
#rust
#deep-learning
#linux
crossmap
★ 9
Open GitHub ↗
Cross-mappability
Download README (.md)
Explore Similar Repositories
irbill
:
Iran bill validation and bill bar-code parsing library
fusion_post
:
modified post-processors for fusion 360
TinyMCERTE-Installer-for-MODX
:
Automatic installation and configuration of the TinyMCE Rich Text Editor for MODX
Parallelization-of-PSO
:
Paralleling Particle Swarm Optimization using OpenMp, MPI and CUDA frameworks and comparing the performance
NicolassingQuillBundle
:
Integrate quilljs into your Symfony project
// repository documentation
Was this content helpful?
★ 0
(0 ratings)
Select Rating:
★
★
★
★
★
Submit Feedback
Recent Feedback
×
Download README
Do you want to download the
README.md
file for
crossmap
?
Download (.md)
# Cross-mappability Cross-mappability from gene A to gene B, crossmap(A,B), is defined as the number of gene A's k-mers (75-mers from exons and 36-mers from UTRs) whose alignment start within exonic or untranslated regions of gene B. Cross-mappability has been described in the following paper. > Saha A, Battle A. 2018. False positives in trans-eQTL and co-expression analyses arising from RNA-sequencing alignment error. ### How to compute cross-mappability * These check pre-requisites before computing cross-mappabilities from the [prerequisites page](https://github.com/battle-lab/crossmap/blob/master/prerequisites.md). * Compute cross-mappabilites genome-wide following instructions step by step from [this page](https://github.com/battle-lab/crossmap/blob/master/compute_crossmap.md). ### Download pre-computed cross-mappability You may download already computed cross-mappability resources for human genome (hg19 and GRCh38) from [here](https://doi.org/10.6084/m9.figshare.c.4297352.v2). ### How to cite Saha A, Battle A. 2018. False positives in trans-eQTL and co-expression analyses arising from RNA-sequencing alignment error. ### Questions / Comments ? Ashis Saha (ashis@jhu.edu)
