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EssentialsOfNeuroscienceWithMATLAB

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# Essentials of Neuroscience with MATLAB

The Essentials of Neuroscience With MATLAB course was developed to provide advanced undergraduates and early graduate students with a basic familiarity with MATLAB programming with an opportunity to deepen their expertise in neuroscience data analysis using MATLAB. Each module covers a range of specific data processing, analysis, and visualization skills that neuroscientists often need. In the process, each module teaches a specific set of MATLAB skills, although there is (both necessarily and by design) some overlap in skills across modules.

Each module consists of: 
- 🎞️ **video instruction** (hosted on YouTube; direct video links in each module folder)
- 🧑‍💻 a **code exercise** (hosted here on GitHub; coupled with the video instruction)
- 💾 **sample data**, if applicable (hosted on [INCF TrainingSpace](https://training.incf.org/collection/essentials-neuroscience-matlab); downloaded automatically)
- 🎒 a **homework exercise** (available for educators upon request)

The course is designed for [cumulative educational flow](https://training.incf.org/sites/default/files/2022-11/image%20%283%29.png), such that maximal benefit will come from taking the modules in order. However, module access is unrestricted, which means that students will have the flexibility to custom-tailor their course progression if they wish to deviate from the recommended path.

### Course Overview Video
[![Course overview video](https://img.youtube.com/vi/VnHeDXaCngg/hqdefault.jpg)](https://www.youtube.com/embed/VnHeDXaCngg)

### Course Modules

| # | Module |  Skills taught | Code Exercise |
|     :---     |   :---    | :---: | :---: |
| 1 | [Spiking data](https://github.com/mikexcohen/EssentialsOfNeuroscienceWithMATLAB/tree/main/module1_spikes) |  [![m1o_4xdown](https://github.com/user-attachments/assets/02824c25-2e70-4b0e-8eca-904b3b542d0b)](https://www.youtube.com/playlist?list=PLn0OLiymPak0VVit5lk5CDAkvLgMD15xi) | [![via this button](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=mikexcohen/EssentialsOfNeuroscienceWithMATLAB&file=/module1_spikes/matlab4neuros_module1_partial.m) |
| 2 | [EEG](https://github.com/mikexcohen/EssentialsOfNeuroscienceWithMATLAB/tree/main/module2_EEG) | [![m2o_4xdown](https://github.com/user-attachments/assets/56987894-3331-47de-bf7c-93bace3925b3)](https://www.youtube.com/playlist?list=PLn0OLiymPak2c239nIUcUMw5KDmfNR9-v) | [![via this button](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=mikexcohen/EssentialsOfNeuroscienceWithMATLAB&file=/module2_EEG/matlab4neuros_module2_partial.m) |
| 3 | [Simulation](https://github.com/mikexcohen/EssentialsOfNeuroscienceWithMATLAB/tree/main/module3_modeling) | [![m3o_4xdown](https://github.com/user-attachments/assets/1849372f-11c0-4540-9aba-874ee58d97c4)](https://www.youtube.com/playlist?list=PLn0OLiymPak0vPlZUd8VrrthQdzGR17kr) | [![via this button](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=mikexcohen/EssentialsOfNeuroscienceWithMATLAB&file=/module3_modeling/matlab4neuros_module3_partial.m) |
| 4 | [fMRI](https://github.com/mikexcohen/EssentialsOfNeuroscienceWithMATLAB/tree/main/module4_FMRI) | [![m4o_4xdown](https://github.com/user-attachments/assets/4b134115-22ad-4111-a4d4-879aa4c0819e)](https://www.youtube.com/playlist?list=PLn0OLiymPak1gP3F_4BFYDbmR2v5n-k9X) | [![via this button](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=mikexcohen/EssentialsOfNeuroscienceWithMATLAB&file=/module4_FMRI/matlab4neuros_module4_partial.m) |
| 5 | [Calcium Imaging](https://github.com/mikexcohen/EssentialsOfNeuroscienceWithMATLAB/tree/main/module5_CaImaging) | [![m5o_4xdown](https://github.com/user-attachments/assets/f07f5e3c-4bb8-45b0-a753-cf7621465a96)](https://www.youtube.com/playlist?list=PLn0OLiymPak1i0V3AXCUJ6HvmqfB2Mf24) | [![via this button](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=mikexcohen/EssentialsOfNeuroscienceWithMATLAB&file=/module5_CaImaging/matlab4neuros_module5_partial.m) |

Enjoy!

EssentialsOfNeuroscienceWithMATLAB

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