12-days-of-biopython

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12-days-of-biopython

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12 days of Biopython is a collection of 12 videos explaining in details how to work with Biopython, a bioinformatics tool using a real life examples.

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# 12 days of Biopython

12 days of Biopython is a collection of 12 videos explaining in details how to work with Biopython, a bioinformatics tool using a real life examples.

Day 1: [Checking quality of the reads - Working with FASTQ files](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_01/day_01-quality_reads_fastq.ipynb)

Day 2: [Accessing NCBI databases with Biopython](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_02/day_02-accessing-ncbi-databases.ipynb)

Day 3: [Pairwise Sequence alignments in Biopython](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_03/day_03-sequence-alignments.ipynb)

Day 4: [BLAST in Biopython](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_04/day_04-blast_biopython.ipynb)

Day 5: [COVID-19 Genome Analysis using Biopython](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_05/day_05-covid_analysis_biopython.ipynb)

Day 6: [BLAST search of COVID](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_06/day_06-blast_covid.ipynb)

Day 7: [Visualisation of COVID protein](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_07/day_07-3d_visualisation_covid.ipynb)

Day 8: [Motif objects in Biopython](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_08/day_08-motif_objects_in_biopython.ipynb)

Day 9: [Plotting sequence length and GC content](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_09/day_09-plotting.ipynb)

Day 10: [Indexing a FASTQ file - how to read big FASTQ file faster?](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_10/day_10-indexing_FASTQ_file.ipynb)

Day 11: [Sorting a sequence file (FASTA or FASTQ file)](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_11/day_11-sorting_sequence_files.ipynb)

Day 12: [Simple quality filtering for FASTQ files](https://github.com/lanadominkovic/12-days-of-biopython/blob/main/12_days_of_biopython/day_12/day_12-filtering_FASTQ_file.ipynb)

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