sciCSR

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Single-Cell Inference of Class Switch Recombination

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# sciCSR

[![DOI](https://zenodo.org/badge/492787223.svg)](https://zenodo.org/badge/latestdoi/492787223)

<img src="man/figures/sciCSR_logo.png" alt="logo" width="200" height="250">
Single-cell inference of Class Switch Recombination

## Documentation

**Documentation is available:** [here](https://josephng-bio.org/sciCSR)

## Citation

To cite sciCSR in publications, please use:

Ng, J.C.F., Montamat Garcia, G., Stewart, A.T. et al. sciCSR infers B cell state transition and predicts class-switch recombination dynamics using single-cell transcriptomic data. Nat Methods (2023). https://doi.org/10.1038/s41592-023-02060-1

Citation formatted in BibTEX:

```
@article{ng_scicsr_2023,
        title = {{sciCSR} infers {B} cell state transition and predicts class-switch recombination dynamics using single-cell transcriptomic data},
        issn = {1548-7105},
        doi = {10.1038/s41592-023-02060-1},
        journal = {Nature Methods},
        author = {Ng, Joseph C. F. and Montamat Garcia, Guillem and Stewart, Alexander T. and Blair, Paul and Mauri, Claudia and Dunn-Walters, Deborah K. and Fraternali, Franca},
        month = nov,
        year = {2023},
        pmid = {37932398},
}

```

sciCSR

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