FAMSA
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
파일 탐색기
최종 버전 다운로드 (.zip)- deploy.yml
- main.yml
- self-hosted.yml
- extHomFam.png
- overview.png
- active_thread_pool.h
- utils.h
- file_wrapper.h
- isa-l
- libdeflate
- mimalloc
- prebuild.bat
- zlib-ng
- defs.h
- io_service.cpp
- io_service.h
- params.cpp
- params.h
- profile.cpp
- profile.h
- profile_par.cpp
- profile_seq.cpp
- queues.cpp
- queues.h
- scoring_matrix.h
- sequence.cpp
- sequence.h
- version.h
- lcsbp.cpp
- lcsbp.h
- lcsbp_classic.cpp
- lcsbp_classic.h
- lcsbp_avx2_intr.cpp
- lcsbp_avx2_intr.h
- lcsbp_avx512_intr.cpp
- lcsbp_avx512_intr.h
- lcsbp_avx_intr.cpp
- lcsbp_avx_intr.h
- lcsbp_neon_intr.cpp
- lcsbp_neon_intr.h
- utils_avx.cpp
- utils_avx2.cpp
- utils_neon.cpp
- AbstractTreeGenerator.cpp
- AbstractTreeGenerator.h
- AbstractTreeGenerator.hpp
- Chained.h
- Clustering.cpp
- Clustering.h
- DistanceCalculator.cpp
- DistanceCalculator.h
- FastTree.cpp
- FastTree.h
- GuideTree.cpp
- GuideTree.h
- IPartialGenerator.h
- MSTPrim.cpp
- MSTPrim.h
- NeighborJoining.cpp
- NeighborJoining.h
- NewickParser.cpp
- NewickParser.h
- SingleLinkage.cpp
- SingleLinkage.h
- SingleLinkageQueue.h
- TreeDefs.h
- UPGMA.cpp
- UPGMA.h
- array.h
- conversion.h
- cpuid.h
- deterministic_random.h
- log.cpp
- log.h
- memory_monotonic.h
- meta_oper.h
- statistics.h
- timer.cpp
- timer.h
- utils.cpp
- utils.h
- famsa.cpp
- famsa.vcxproj
- famsa.vcxproj.filters
- msa.cpp
- msa.h
- msa_refinement.cpp
- adeno_fiber
- dist.csv
- dist_sq.csv
- gaps.fasta
- pid.csv
- pid_sq.csv
- sl.dnd
- sl.fasta
- slink.dnd
- upgma.dnd
- upgma.fasta
- upgma.no_refine.fasta
- upgma.no_refine.part1.fasta
- upgma.no_refine.part2.fasta
- upgma.pp.fasta
- adeno_fiber_duplicates
- sl.dnd
- sl.fasta
- adeno_fiber_extra
- ref.fasta
- many-seq
- many-seq.aln
- one-seq
- one-seq.aln
- two-seq
- two-seq.aln
- hemopexin
- medoid-evals5.dnd
- medoid-frac0.2.dnd
- medoid-iters1.dnd
- medoid-nj.dnd
- medoid-nj.fasta
- medoid-seeds10.dnd
- medoid-seeds10_th100_sample100_evals1_frac0.2_iters1.dnd
- medoid-sl.dnd
- medoid-sl.fasta
- medoid-slink.dnd
- medoid-th100.dnd
- medoid-th1000.dnd
- medoid-th1000_sample100.dnd
- medoid-th100_sample10.dnd
- medoid-th10_sample100.dnd
- medoid-upgma.dnd
- medoid-upgma.fasta
- hemopexin_duplicates
- medoid-sl-dups.dnd
- medoid-sl-dups.fasta
- medoid-sl.dnd
- medoid-sl.fasta
- LRR
- sl.dnd
- generate.sh
- reorder.py
- split.py
- .gitignore
- .gitmodules
- CODE_OF_CONDUCT.md
- CONTRIBUTING.md
- FAMSA.sln
- LICENSE
- makefile
- README.md
- refresh.mk
- run.sh
// repository documentation
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