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self-paced-ensemble

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[ICDE'20] ⚖️ A general, efficient ensemble framework for imbalanced classification. | 泛用，高效，鲁棒的类别不平衡学习框架

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- - __init__.py
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# Installation Guide

1. Get the code

git clone https://github.com/ZhiningLiu1998/self-paced-ensemble

Downloads the entire project code from GitHub to your computer.

cd self-paced-ensemble

Moves into the project folder you just downloaded.

2. Python

Easy Recommended

Prerequisites

Git Needed to download the project code from GitHub.
Python 3 On Windows, be sure to check 'Add Python to PATH' during installation.

$ pip install self-paced-ensemble # normal install

Installs the Python libraries listed in requirements.txt (or similar).

$ pip install --upgrade self-paced-ensemble # update if needed

Installs the Python libraries listed in requirements.txt (or similar).

✅ If it runs without errors and prints output in the terminal, it worked.

Pulled directly from this repo's README.

// repository documentation

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![](https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/spe/spe_header.png)

<p align="center">
  <a href="https://github.com/ZhiningLiu1998/self-paced-ensemble">
    <img src="https://img.shields.io/badge/ZhiningLiu1998-SPE-orange">
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<a href="https://github.com/ZhiningLiu1998/self-paced-ensemble#contributors-"><img src="https://img.shields.io/badge/all_contributors-7-orange.svg"></a>

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</p>

<h3 align="center"> Self-paced Ensemble for Highly Imbalanced Massive Data Classification
(ICDE 2020)
</h3>

<h3 align="center">
Links: 
<a href="https://conferences.computer.org/icde/2020/pdfs/ICDE2020-5acyuqhpJ6L9P042wmjY1p/290300a841/290300a841.pdf">Paper</a> | 
<a href="https://zhiningliu.com/files/ICDE_2020_SPE_slides.pdf">Slides</a> | 
<a href="https://www.bilibili.com/video/BV1Fg411L7gk">Video</a> | 
<a href="https://arxiv.org/abs/1909.03500v3">arXiv</a> | 
<a href="https://pypi.org/project/self-paced-ensemble">PyPI</a> | 
<a href="https://imbalanced-ensemble.readthedocs.io/en/latest/api/ensemble/_autosummary/imbens.ensemble.SelfPacedEnsembleClassifier.html">API Reference</a> | 
<a href="https://github.com/ZhiningLiu1998/self-paced-ensemble#related-projects">Related Projects</a> |
<a href="https://zhuanlan.zhihu.com/p/86891438">Zhihu/知乎</a>
</h3>

**Self-paced Ensemble (SPE) is an ensemble learning framework for massive highly imbalanced classification. It is an easy-to-use solution to class-imbalanced problems, features outstanding computing efficiency, good performance, and wide compatibility with different learning models. This SPE implementation supports multi-class classification.**

<table><tr><td bgcolor=MistyRose align="center"><strong>
<font color='red'>Note: </font> 
<font color=Navy> 
SPE is now a part of <a href="https://github.com/ZhiningLiu1998/imbalanced-ensemble"> imbalanced-ensemble </a> [<a href="https://imbalanced-ensemble.readthedocs.io/en/latest/">Doc</a>, <a href="https://pypi.org/project/imbalanced-ensemble/">PyPI</a>]. Try it for more methods and advanced features!
</font>
</strong></td></tr></table>

## Cite Us

**If you find this repository helpful in your work or research, we would greatly appreciate citations to the following [paper](https://arxiv.org/pdf/1909.03500v3.pdf):**

```bib
@inproceedings{liu2020self-paced-ensemble,
    title={Self-paced Ensemble for Highly Imbalanced Massive Data Classification},
    author={Liu, Zhining and Cao, Wei and Gao, Zhifeng and Bian, Jiang and Chen, Hechang and Chang, Yi and Liu, Tie-Yan},
    booktitle={2020 IEEE 36th International Conference on Data Engineering (ICDE)},
    pages={841--852},
    year={2020},
    organization={IEEE}
}
```

## Installation

It is recommended to use **pip** for installation.  
Please make sure the **latest version** is installed to avoid potential problems:
```shell
$ pip install self-paced-ensemble            # normal install
$ pip install --upgrade self-paced-ensemble  # update if needed
```

Or you can install SPE by clone this repository:
```shell
$ git clone https://github.com/ZhiningLiu1998/self-paced-ensemble.git
$ cd self-paced-ensemble
$ python setup.py install
```

Following dependencies are required:
- [python](https://www.python.org/) (>=3.6)
- [numpy](https://numpy.org/) (>=1.13.3)
- [scipy](https://www.scipy.org/) (>=0.19.1)
- [joblib](https://pypi.org/project/joblib/) (>=0.11)
- [scikit-learn](https://scikit-learn.org/stable/) (>=0.24)
- [imblearn](https://pypi.org/project/imblearn/) (>=0.7.0)
- [imbalanced-ensemble](https://pypi.org/project/imbalanced-ensemble/) (>=0.1.3)

## Table of Contents

- [Cite Us](#cite-us)
- [Installation](#installation)
- [Table of Contents](#table-of-contents)
- [Background](#background)
- [Documentation](#documentation)
- [Examples](#examples)
  - [**API demo**](#api-demo)
  - [**Advanced usage example**](#advanced-usage-example)
  - [Save \& Load model](#save--load-model)
  - [**Compare SPE with other methods**](#compare-spe-with-other-methods)
- [Results](#results)
- [Miscellaneous](#miscellaneous)
- [References](#references)
- [Related Projects](#related-projects)
- [Contributors ✨](#contributors-)

## Background

SPE performs strictly balanced under-sampling in each iteration and is therefore very *computationally efficient*. In addition, SPE does not rely on calculating the distance between samples to perform resampling. It can be easily applied to datasets that lack well-defined distance metrics (e.g. with categorical features / missing values) without any modification. Moreover, as a *generic ensemble framework*, our methods can be easily adapted to most of the existing learning methods (e.g., C4.5, SVM, GBDT, and Neural Network) to boost their performance on imbalanced data. Compared to existing imbalance learning methods, *SPE works particularly well on datasets that are large-scale, noisy, and highly imbalanced (e.g. with imbalance ratio greater than 100:1).* Such kind of data widely exists in real-world industrial applications. The figure below gives an overview of the SPE framework.

![image](https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/spe/framework.png)

## Documentation

**Our SPE implementation can be used much in the same way as the [`sklearn.ensemble`](https://scikit-learn.org/stable/modules/classes.html#module-sklearn.ensemble) classifiers. Detailed documentation of ``SelfPacedEnsembleClassifier`` can be found [HERE](https://imbalanced-ensemble.readthedocs.io/en/latest/api/ensemble/_autosummary/imbens.ensemble.SelfPacedEnsembleClassifier.html).**

## Examples

You can check out [**examples using SPE**](https://imbalanced-ensemble.readthedocs.io/en/latest/api/ensemble/_autosummary/imbens.ensemble.SelfPacedEnsembleClassifier.html#examples-using-imbalanced-ensemble-ensemble-selfpacedensembleclassifier) for more comprehensive usage examples.

![](https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/imbalanced-ensemble/example_gallery_snapshot.png)

### **API demo**
```python
from self_paced_ensemble import SelfPacedEnsembleClassifier
from sklearn.tree import DecisionTreeClassifier
from sklearn.datasets import make_classification
from sklearn.model_selection import train_test_split

# Prepare class-imbalanced train & test data
X, y = make_classification(n_classes=2, random_state=42, weights=[0.1, 0.9])
X_train, X_test, y_train, y_test = train_test_split(
    X, y, test_size=0.5, random_state=42)

# Train an SPE classifier
clf = SelfPacedEnsembleClassifier(
        base_estimator=DecisionTreeClassifier(), 
        n_estimators=10,
    ).fit(X_train, y_train)

# Predict with an SPE classifier
clf.predict(X_test)
```

### **Advanced usage example**

Please see [usage_example.ipynb](https://github.com/ZhiningLiu1998/self-paced-ensemble/blob/master/examples/usage_example.ipynb).

### Save & Load model

We recommend to use joblib or pickle for saving and loading SPE models, e.g.,
```python
from joblib import dump, load

# save the model
dump(clf, filename='clf.joblib')
# load the model
clf = load('clf.joblib')
```
You can also use the alternative APIs provided in SPE:
```python
from self_paced_ensemble.utils import save_model, load_model

# save the model
clf.save('clf.joblib')        # option 1
save_model(clf, 'clf.joblib') # option 2
# load the model
clf = load_model('clf.joblib')
```

### **Compare SPE with other methods**

Please see [comparison_example.ipynb](https://github.com/ZhiningLiu1998/self-paced-ensemble/blob/master/examples/comparison_example.ipynb).

## Results

Dataset links:
[Credit Fraud](https://www.kaggle.com/mlg-ulb/creditcardfraud), 
[KDDCUP](https://archive.ics.uci.edu/ml/datasets/kdd+cup+1999+data), 
[Record Linkage](https://archive.ics.uci.edu/ml/datasets/Record+Linkage+Comparison+Patterns), 
[Payment Simulation](https://www.kaggle.com/ealaxi/paysim1).

![image](https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/spe/statistics.png)

Comparisons of SPE with traditional resampling/ensemble methods in terms of performance & computational efficiency.

![image](https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/spe/results_resampling.png)

![image](https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/spe/results_ensemble.png)

![image](https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/spe/results_ensemble_curve.png)

## Miscellaneous

**This repository contains:**
- Implementation of Self-paced Ensemble
- Implementation of 5 ensemble-based imbalance learning baselines
  - `SMOTEBoost` [1]
  - `SMOTEBagging` [2]
  - `RUSBoost` [3]
  - `UnderBagging` [4]
  - `BalanceCascade` [5]
- Implementation of resampling based imbalance learning baselines [6]
- Additional experimental results

**NOTE:** The implementations of other ensemble and resampling methods are based on [imbalanced-ensemble](https://github.com/ZhiningLiu1998/imbalanced-ensemble) and [imbalanced-learn](https://github.com/scikit-learn-contrib/imbalanced-learn).

## References

| #   | Reference                                                                                                                                                                                                                                         |
| --- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| [1] | N. V. Chawla, A. Lazarevic, L. O. Hall, and K. W. Bowyer, Smoteboost: Improving prediction of the minority class in boosting. in European conference on principles of data mining and knowledge discovery. Springer, 2003, pp. 107–119            |
| [2] | S. Wang and X. Yao, Diversity analysis on imbalanced data sets by using ensemble models. in 2009 IEEE Symposium on Computational Intelligence and Data Mining. IEEE, 2009, pp. 324–331.                                                           |
| [3] | C. Seiffert, T. M. Khoshgoftaar, J. Van Hulse, and A. Napolitano, “Rusboost: A hybrid approach to alleviating class imbalance,” IEEE Transactions on Systems, Man, and Cybernetics-Part A: Systems and Humans, vol. 40, no. 1, pp. 185–197, 2010. |
| [4] | R. Barandela, R. M. Valdovinos, and J. S. Sanchez, “New applications´ of ensembles of classifiers,” Pattern Analysis & Applications, vol. 6, no. 3, pp. 245–256, 2003.                                                                            |
| [5] | X.-Y. Liu, J. Wu, and Z.-H. Zhou, “Exploratory undersampling for class-imbalance learning,” IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics), vol. 39, no. 2, pp. 539–550, 2009.                                          |
| [6] | Guillaume Lemaître, Fernando Nogueira, and Christos K. Aridas. Imbalanced-learn: A python toolbox to tackle the curse of imbalanced datasets in machine learning. Journal of Machine Learning Research, 18(17):1–5, 2017.                         |

## Related Projects

**Check out [Zhining](https://zhiningliu.com/)'s other open-source projects!**  
<table style="font-size:15px;">
  <tr>
    <td align="center"><a href="https://github.com/ZhiningLiu1998/imbalanced-ensemble"><img src="https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/thumbnails/imbens-thumb.png" height="80px" alt=""/><br /><sub><b>Imbalanced-Ensemble [PythonLib]</b></sub></a><br />
      <a href="https://github.com/ZhiningLiu1998/imbalanced-ensemble/stargazers">
      <img alt="GitHub stars" src="https://img.shields.io/github/stars/ZhiningLiu1998/imbalanced-ensemble?style=social">
      </a>
    </td>
    <td align="center"><a href="https://github.com/ZhiningLiu1998/awesome-imbalanced-learning"><img src="https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/thumbnails/awesomeil-thumb.png" height="80px" alt=""/><br /><sub><b>Imbalanced Learning [Awesome]</b></sub></a><br />
      <a href="https://github.com/ZhiningLiu1998/awesome-imbalanced-learning/stargazers">
      <img alt="GitHub stars" src="https://img.shields.io/github/stars/ZhiningLiu1998/awesome-imbalanced-learning?style=social">
      </a>
    </td>
    <td align="center"><a href="https://github.com/ZhiningLiu1998/awesome-awesome-machine-learning"><img src="https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/thumbnails/awesomeml-thumb.png" height="80px" alt=""/><br /><sub><b>Machine Learning [Awesome]</b></sub></a><br />
      <a href="https://github.com/ZhiningLiu1998/awesome-awesome-machine-learning/stargazers">
      <img alt="GitHub stars" src="https://img.shields.io/github/stars/ZhiningLiu1998/awesome-awesome-machine-learning?style=social">
      </a>
    </td>
    <td align="center"><a href="https://github.com/ZhiningLiu1998/mesa"><img src="https://raw.githubusercontent.com/ZhiningLiu1998/figures/master/thumbnails/mesa-thumb.png" height="80px" alt=""/><br /><sub><b>Meta-Sampler [NeurIPS]</b></sub></a><br />
      <a href="https://github.com/ZhiningLiu1998/mesa/stargazers">
      <img alt="GitHub stars" src="https://img.shields.io/github/stars/ZhiningLiu1998/mesa?style=social">
      </a>
    </td>
  </tr>
</table>

## Contributors ✨

Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/docs/en/emoji-key)):

<table>
  <tr>
    <td align="center"><a href="http://zhiningliu.com"><img src="https://avatars.githubusercontent.com/u/26108487?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Zhining Liu</b></sub></a><br /><a href="https://github.com/ZhiningLiu1998/self-paced-ensemble/commits?author=ZhiningLiu1998" title="Code">💻</a> <a href="https://github.com/ZhiningLiu1998/self-paced-ensemble/commits?author=ZhiningLiu1998" title="Documentation">📖</a> <a href="#example-ZhiningLiu1998" title="Examples">💡</a></td>
    <td align="center"><a href="https://yumingfu.space/"><img src="https://avatars.githubusercontent.com/u/23732534?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Yuming Fu</b></sub></a><br /><a href="https://github.com/ZhiningLiu1998/self-paced-ensemble/commits?author=rudolffu" title="Code">💻</a> <a href="https://github.com/ZhiningLiu1998/self-paced-ensemble/issues?q=author%3Arudolffu" title="Bug reports">🐛</a></td>
    <td align="center"><a href="https://thul.io"><img src="https://avatars.githubusercontent.com/u/95307?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Thúlio Costa</b></sub></a><br /><a href="https://github.com/ZhiningLiu1998/self-paced-ensemble/commits?author=thulio" title="Code">💻</a> <a href="https://github.com/ZhiningLiu1998/self-paced-ensemble/issues?q=author%3Athulio" title="Bug reports">🐛</a></td>
    <td align="center"><a href="https://github.com/jerrylususu"><img src="https://avatars.githubusercontent.com/u/17522475?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Neko Null</b></sub></a><br /><a href="#maintenance-jerrylususu" title="Maintenance">🚧</a></td>
    <td align="center"><a href="https://github.com/lirenjieArthur"><img src="https://avatars.githubusercontent.com/u/31763604?v=4?s=100" width="100px;" alt=""/><br /><sub><b>lirenjieArthur</b></sub></a><br /><a href="https://github.com/ZhiningLiu1998/self-paced-ensemble/issues?q=author%3AlirenjieArthur" title="Bug reports">🐛</a></td>
    <td align="center"><a href="https://github.com/mokeeqian"><img src="https://avatars.githubusercontent.com/u/45727636?v=4?s=100" width="100px;" alt=""/><br /><sub><b>AC手动机</b></sub></a><br /><a href="https://github.com/ZhiningLiu1998/self-paced-ensemble/issues?q=author%3Amokeeqian" title="Bug reports">🐛</a></td>
    <td align="center"><a href="https://www.linkedin.com/in/carlo-moro-4a20a7132"><img src="https://avatars.githubusercontent.com/u/21183273?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Carlo Moro</b></sub></a><br /><a href="#ideas-cnmoro" title="Ideas, Planning, & Feedback">🤔</a></td>
  </tr>
</table>

This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind welcome!