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## Lecture Materials for the Vatican Observatory Summer School 2023
### command to copy this repository to your computer: 
### >git clone https://github.com/VaticanObsSummerSchool2023/lectures.git

== [Software installation instructions](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/SOFTWARE_INSTALLATION.md) ==

== [Evening events](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/EveningEvents.md) ==

== [Project descriptions](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Projects.md) ==

### **WEEK 1**

### June 5 (Monday)

* [11:45 - 12:45] [Introduction to School](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS2023_introLecture.pptx) (Viviana and Zeljko)

* [14:00 - 16:30] [Tutorial: Git, GitHub, and Notebooks](https://docs.google.com/presentation/d/1q30oOAyfFAEx0sdM8aYATYfCjt1IWtj5rtydm-4k2lY/edit?usp=sharing) (Paco)

### June 6 (Tuesday)

* [8:30 - 9:45] [Science drivers: the Milky Way and time domain](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/IvezicJune6.pptx) (Zeljko)
* [10:15 - 11:30] [Science drivers: Galaxies](https://docs.google.com/presentation/d/1oeS4rFJ1S8awk26LoJ4vUE2djAPq8e_I6GJtRC0_FqE/edit?usp=sharing) (Paco)
* [11:45 - 12:45] [Science drivers: Quasars](https://drive.google.com/file/d/14W1t_oyJ4uErJvw-bvLwBje82Rd7_VQV/view?usp=share_link) (Stefano Cristiani)

* [14:15 - 16:30] [Tutorial: Accessing and Manipulating Data](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/IvezicJune7.ipynb) (Zeljko)

### June 7 (Wednesday)

* [08:30 - 09:45] [Intro to ML I](https://docs.google.com/presentation/d/1mMUBKLH6E-Br8ejE5PA7GJChcPNrA1M-XAgiu4HhZCU/edit?usp=sharing) (Paco)

* [10:15 - 11:30] [Intro to ML II](https://docs.google.com/presentation/d/1KWKrTO_kcqkt9tJGKAm4bTFXw6Aunl4i_lywP5iS6bs/edit?usp=sharing) (Paco)

* [11:45 - 12:45] [Decision Trees](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_Intro_DT.pptx) (Viviana)

* [14:15 - ] [Tutorial: Globus + hdf5](https://docs.google.com/presentation/d/1ZVdCGm8y2DlsFsIXVV8F8n49bHeqwn4oXi_aq4FYOyM/edit?usp=sharing) (Paco)
* [ - 16:30] [Tutorial:  SQL and SDSS CasJobs (prepared by D. Baron)](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/sql_and_casjobs_tutorial.ipynb) (Paco)

### June 8 (Thursday)

* [08:30 - 09:45] [DT in code](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Intro_DT_HabPlanets.ipynb) (Viviana)

* [k Nearest Neighbors](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_Intro_kNN.pptx)

* [Data](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/data/HPLearningSet.csv)

* [10:15 - 11:30] [Evaluating, Diagnosing, and Improving ML models](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_Diagnostics.pptx) (Viviana)

* [11:45 - 12.45] [Exercise: DT and kNN](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/HP_Exercise.ipynb) (Viviana)

* [Data](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/data/phl_exoplanet_catalog.csv)

* [12:45 - 14.15] Lunch

* [14:15 - 16.00] [Tutorial: “Accessing data from CAMELS simulations”](https://docs.google.com/presentation/d/1g-tKZMO-mdRJXhTtMXSbCnP8UBL2CPtdl7CM7DuqVZU/edit?usp=sharing)  (Paco)
  
* [19:00 - 20:00] [Science drivers: InterGalactic Medium, Cosmology and Quasar Surveys](https://drive.google.com/file/d/1ymSP2vLTWtRKhO4YVUcxe1uxleA2arN3/view?usp=share_link) (Stefano Cristiani)

### June 9 (Friday)

#### *No lectures - visit to Arcetri!*

&nbsp;  
### **WEEK 2**

### June 12 (Monday)

* [08:30 - 09:45] [Regression - Lecture notes](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_Regression.pptx) (Viviana)
* [08:30 - 09:45] [Regression - Notebook](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/LinearRegression.ipynb)

* [10:15 - 11:30] [Numerical simulations and AI](https://docs.google.com/presentation/d/1gitkDRRD4m7G8ISsQGCqwulmOW5MUNXbudShYxbP8L0/edit?usp=sharing) (Paco)

* [11:45 - 12:45] Guest lecture by Adam Hincks: How to Measure the Oldest Light in the Universe and What it Tells us

* [12:45 - 14:15] Lunch

Afternoon: Projects Discussion (exact timing TBD)

* [19:00 - 20:00] Guest lecture by Giorgio Calderone: “QUBRICS: Selecting bright QSOs at high-z with Machine Learning techniques”.

### June 13 (Tuesday)

* [08:30 - 09:45] [Regularization - Lecture notes](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_Regularization.pptx) (Viviana)
* [08:30 - 09:45] [ParamOp - Lecture notes](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_ParamOp.pptx) (Viviana)
* [08:30 - 09:45] [Param Op - Notebook](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/ParticleID_wDT.ipynb)

* [10:15 - 11:30] [Working with neural networks](https://colab.research.google.com/drive/1e846wc10-bQgxqPUJMlo-VBA2aHW77d5?usp=sharing) (Paco)

* [11:45 - 12:45] Student talks I (Hanneke, Belen, Francesco; Chair: Ashod)

* [12:45 - 14.15] Lunch

* [19:00 - 20:00] Guest lecture by Maria Elena Monzani: [Data-intensive searches for Dark Matter](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Monzani-GuestTalk-Jun13.pdf)

### June 14 (Wednesday)

* [08:30 - 09:45] [Input data and distance measures - lecture](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_input_data_and_distances_presentation.pdf) (Dalya)
* [08:30 - 09:45] [Input data and distance measures - Jupyter notebook](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_input_data_and_distance_matrices.ipynb) (Dalya)

* [10:15 - 11:30] [Ensemble methods](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_Bagging_Boosting.pptx) (Viviana)
* [10:15 - 11:30] [Photoz w/ RF Notebook](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_Photoz_RF.ipynb)

* [11:45 - 12:45] Student talks II (Bonny, Elodie, Rodrigo; Chair: Hanneke)

* [12:45 - 14.15] Lunch

* [19:00 - 20:00] Guest lecture by Richard DSouza: "Reconstructing the history of individual Milky-Way mass galaxies through cosmological simulations"

### June 15 (Thursday)

#### *No lectures - visit to Vatican!*

### June 16 (Friday)

* [08:30 - 09:45] [Density estimation - lecture](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_density_estimation.ipynb) (Dalya)

* [10:15 - 11:30] [Boosting and Feature Importance](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_Boosting_FeatImp.pptx) (Viviana)

* [10:15 - 11:30] [Boosting Notebook](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/VOSS_FlavorsOfBoosting.ipynb)

* [11:45 - 12:45] [High-z AGNs and their possible role on Reionization (ppt)](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Grazian_VOSS2023.ppt) (Andrea Grazian)
* [11:45 - 12:45] [High-z AGNs and their possible role on Reionization (pdf)](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Grazian_VOSS2023.pdf) (Andrea Grazian)

&nbsp;  
### **WEEK 3**

### June 19 (Monday)
* [08:30 - 09:45] [Clustering - lecture](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_clustering_algorithms_presentation.pdf) (Dalya)
* [08:30 - 09:45] [Clustering - Jupyter notebook](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_clustering_algorithms.ipynb) (Dalya)

* [10:15-11:30] [Dimensionality Reduction Part 1 (PCA) - lecture](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_dimensionality_reduction_pca_nmf.pdf) (Dalya)
* [10:15-11:30] [Dimensionality Reduction Part 1 (PCA) - Jupyter notebook](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_dimensionality_reduction_PCA_ICA_NNMF.ipynb) (Dalya)

### June 20 (Tuesday)
* [08:30-09:45] [Dimensionality Reduction Part 1 (PCA) - lecture](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_dimensionality_reduction_pca_nmf.pdf) (Dalya)
* [08:30-09:45] [Dimensionality Reduction Part 1 (PCA) - Jupyter notebook](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_dimensionality_reduction_PCA_ICA_NNMF.ipynb) (Dalya)

* [10:15-11:30] [Dimensionality Reduction Part 2 (SOM, tSNE, UMAP) - lecture](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_dimensionality_reduction_all.pdf) (Dalya)
* [10:15-11:30] [Dimensionality Reduction Part 3 (Sequencer) - lecture](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_sequencer.pdf) (Dalya)

### June 21 (Wednesday)
* [08:30-09:45] [Dimensionality Reduction - example with the PHANGS dataset](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_dimensionality_reduction_PHANGS_example.pdf) (Dalya)

* [10:15-11:30] [Outlier Detection - lecture](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/Baron_outlier_detection_algorithms.pdf) (Dalya)

### June 22 (Thursday)
* [8:30-9:45] [Introduction to Deep Learning 1](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/MHC_lecture1.pdf) (Marc)
* [10:15-11:30] [Maximum Likelihood Method](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/IvezicJune22.ipynb) (Zeljko)

### June 23 (Friday)
* [8:30-9:45] [Introduction to Deep Learning  2](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/MHC_lecture2.pdf) (Marc)
* [10:15-11:30] [Introduction to Bayesian statistics](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/IvezicJune23.ipynb) (Zeljko)

&nbsp;  
### **WEEK 4**

### June 26 (Monday)
* [8:30-9:45] [CNNs1](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/MHC_lecture3.pdf) (Marc)
* [10:15-11:30] [CNNs2](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/MHC_lecture4.pdf) (Marc) 
### June 27 (Tuesday)
* [8:30-9:45] [Transformers1](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/MHC_lecture5.pdf) (Marc)
*  [10:15-11:30] [Transformers2](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/L07b_Transformer.ipynb) (Marc)
### June 28 (Wednesday)

* [8:30-9:45] [Generative Models 1](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/MHC_lecture7.pdf) (Marc)
* [10:15-11:30] [Markov Chain Monte Carlo methods](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/IvezicJune28.ipynb) (Zeljko)

### June 29 (Thursday)

* [8:30-9:45] [MCMC applications in Bayesian statistics](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/IvezicJune29.ipynb) (Zeljko)
* [10:15-11:30] [Generative Models 2](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/MHC_lecture8.pdf) (Marc)

* [11:45-12:30] [Introduction to Project Management](https://github.com/VaticanObsSummerSchool2023/lectures/blob/main/IvezicProjectManagement.pptx) (Zeljko)

### June 30 (Friday)

#### *No lectures - graduation!*

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