snpr

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The sources of the openSNP website

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- - build.yml
- - achievements_controller.rb
  - application_controller.rb
  - beacon_controller.rb
  - das_controller.rb
  - genotypes_controller.rb
  - index_controller.rb
  - messages_controller.rb
  - news_controller.rb
  - open_humans_profiles_controller.rb
  - password_resets_controller.rb
  - phenotype_comments_controller.rb
  - phenotype_sets_controller.rb
  - phenotypes_controller.rb
  - picture_phenotype_comments_controller.rb
  - picture_phenotypes_controller.rb
  - search_results_controller.rb
  - snp_comments_controller.rb
  - snps_controller.rb
  - static_controller.rb
  - updates_controller.rb
  - user_phenotypes_controller.rb
  - user_picture_phenotypes_controller.rb
  - user_sessions_controller.rb
  - user_snps_controller.rb
  - users_controller.rb
- - application_helper.rb
  - snpedia_papers_helper.rb
- - user_mailer.rb
- - achievement.rb
  - application_record.rb
  - genome_gov_paper.rb
  - genotype.rb
  - homepage.rb
  - mendeley_paper.rb
  - message.rb
  - open_humans_profile.rb
  - pgp_annotation.rb
  - phenotype.rb
  - phenotype_comment.rb
  - phenotype_set.rb
  - picture_phenotype.rb
  - picture_phenotype_comment.rb
  - plos_paper.rb
  - search_result.rb
  - snp.rb
  - snp_comment.rb
  - snp_reference.rb
  - snpedia_paper.rb
  - user.rb
  - user_achievement.rb
  - user_phenotype.rb
  - user_picture_phenotype.rb
  - user_session.rb
  - user_snp.rb
- - phenotype_recommender.rb
  - variation_recommender.rb
- - data_zipper_service.rb
  - last_updated_snps_service.rb
  - open_humans_service.rb
- - data_zipper_worker.rb
  - delete_genotype.rb
  - fixphenotypes.rb
  - frequency.rb
  - genome_gov.rb
  - mailnewphenotype.rb
  - mendeley_details.rb
  - mendeley_search.rb
  - parsing.rb
  - pgpannotation.rb
  - plos_details.rb
  - plos_search.rb
  - preparsing.rb
  - recommender_worker.rb
  - snpedia.rb
  - update_papers.rb
  - zip_genotyping_files.rb
- - parse_queue_length
  - requests.sh
  - response_time.sh
  - sidekiq_workers.sh
- build_native_recommendify
- deploy
- docker-run
- extract_env_var_names_for_nginx
- rails
- rake
- rspec
- spring
- - development.rb
  - production.rb
  - staging.rb
  - test.rb
- - backtrace_silencers.rb
  - inflections.rb
  - mendeley.rb
  - mime_types.rb
  - paperclip.rb
  - recommendify.rb
  - secret_token.rb
  - sentry.rb
  - session_store.rb
  - time_formats.rb
  - zip.rb
- - devise.en.yml
  - en.yml
- application.rb
- boot.rb
- database.yml.ci
- database.yml.example
- deploy.rb
- environment.rb
- routes.rb
- schedule.rb
- sidekiq.yml
- - 20110608000645_create_users.rb
  - 20110615045458_create_phenotypes.rb
  - 20110615173154_create_genotypes.rb
  - 20110616192820_create_snps.rb
  - 20110617144145_create_user_snps.rb
  - 20110819233120_create_plos_papers.rb
  - 20110820195410_create_mendeley_papers.rb
  - 20110821112909_add_user_phenotype.rb
  - 20110822071221_create_snpedia_papers.rb
  - 20110822110806_create_homepages.rb
  - 20110823032055_create_messages.rb
  - 20110824164934_create_snp_comments.rb
  - 20110830134100_create_phenotype_comments.rb
  - 20110912190409_change_snp_foreign_key_for_user_snps.rb
  - 20110914100443_create_user_achievements.rb
  - 20110914100516_create_achievements.rb
  - 20110914151105_add_avatar_columns_to_user.rb
  - 20110917193600_add_help_columns_to_user.rb
  - 20110926092220_add_description_columns_to_phenotype.rb
  - 20110926172905_add_sex_age_columns_to_user.rb
  - 20111005210020_add_notifier_columns_to_user.rb
  - 20111006133700_add_newsletter_column_to_user.rb
  - 20111006163700_add_phenotype_mail_column_to_user.rb
  - 20111007141500_add_user_snp_index.rb
  - 20111007145000_add_snp_ranking_index.rb
  - 20111018040633_add_user_snp_bigint.rb
  - 20111028190606_create_friendly_id_slugs.rb
  - 20111028212506_add_slug_column_to_snps.rb
  - 20111029180506_remove_slug_column_from_snps.rb
  - 20111102033039_add_revision_to_snpedia_paper.rb
  - 20111212063354_create_file_links.rb
  - 20120208020405_add_snp_pos_chrom_index.rb
  - 20120324143135_change_known_phenotypes.rb
  - 20120509234035_truly_add_revision_to_snpedia_paper.rb
  - 20120902113435_create_fitbit_profiles.rb
  - 20120902174500_create_fitbit_bodies.rb
  - 20120902175000_create_fitbit_sleeps.rb
  - 20120902175500_create_fitbit_activities.rb
  - 20120916211800_create_phenotype_sets.rb
  - 20120916212700_create_phenotype_sets_phenotypes_join_table.rb
  - 20121006230458_create_genome_gov_papers.rb
  - 20121020153113_create_pgp_annotations.rb
  - 20121023032404_add_md5sum_to_genotyping.rb
  - 20121123234958_create_picture_phenotypes.rb
  - 20121123235228_add_user_picture_phenotype.rb
  - 20121124201111_create_picture_phenotype_comments.rb
  - 20121210131554_use_paperclip_with_genotypes.rb
  - 20121213120010_add_indexes_on_snps_and_usersnps.rb
  - 20130124085042_change_fitbit_types.rb
  - 20130608135719_add_index_on_mendeley_snp.rb
  - 20130904010945_devise_create_admin_users.rb
  - 20130904010949_create_admin_notes.rb
  - 20130904010950_move_admin_notes_to_comments.rb
  - 20131117101353_add_references.rb
  - 20131130123430_remove_snp_id_from_papers.rb
  - 20140120005457_remove_index_from_snp_references.rb
  - 20140221060607_add_user_snps_count.rb
  - 20140509001806_change_description_format_in_picture_phenotypes.rb
  - 20140820071334_add_defaults_for_frequencies_to_snps.rb
  - 20151019160643_move_user_snp_import_sql_into_database.rb
  - 20151028130755_remove_nonunique_snp_references.rb
  - 20151119070640_remove_dangling_entries.rb
  - 20160207043305_add_foreign_key_constraints.rb
  - 20160626121340_move_frequency_jobs_to_frequency_queue.rb
  - 20160806143618_remove_counter_columns.rb
  - 20161226175703_add_admin_flag_to_users.rb
  - 20171113104813_create_open_humans_profiles.rb
  - 20180118100003_remove_fitbit.rb
  - 20180521160808_add_encrypted_body_to_message.rb
- development_seeds.rb
- seeds.rb
- structure.sql
- README_FOR_APP
- - helpers.rb
- - .gitkeep
  - clean_annotation.rake
  - delete_brokensnpedia.rake
  - dump.rake
  - dump_annotation.rake
  - dump_numbers.rake
  - fix_dangling_user_snps.rake
  - fix_phenotype_slashes.rake
  - generate_genotype_md5sums.rake
  - print_stats.rake
  - recommender.rake
  - rubocop.rake
  - send_newsletter.rake
  - send_survey.rake
  - update_frequencies.rake
  - update_knownphenotypes.rake
  - update_mt_chromosome_name.rake
  - update_papers.rake
  - update_positions.rake
  - update_snpedia.rake
  - update_snpedia_marshall_array.rake
- admin_constraint.rb
- 404.html
- 422.html
- 500.html
- favicon.ico
- humans.txt
- maintenance.html
- robots.txt
- - user_snps_controller_spec.rb
- - achievements.rb
  - fitbit_activities.rb
  - fitbit_bodies.rb
  - fitbit_profiles.rb
  - fitbit_sleeps.rb
  - genome_gov_papers.rb
  - genotypes.rb
  - mendeley_papers.rb
  - messages.rb
  - open_humans_profiles.rb
  - phenotype_comments.rb
  - phenotypes.rb
  - picture_phenotypes.rb
  - plos_papers.rb
  - snp_comments.rb
  - snpedia_papers.rb
  - snps.rb
  - user_achievements.rb
  - user_phenotypes.rb
  - user_picture_phenotypes.rb
  - user_snps.rb
  - users.rb
- - delete_genotype_spec.rb
  - download_full_dump_spec.rb
  - entering_new_phenotypes_spec.rb
  - login_spec.rb
  - messaging_spec.rb
  - not_yet_entered_variations_spec.rb
  - openhumans_spec.rb
  - password_change_spec.rb
  - phenotype_comments_spec.rb
  - phenotype_recommendation_spec.rb
  - search_spec.rb
  - snp_comments_spec.rb
  - snp_page_spec.rb
  - upload_genotype_spec.rb
- - genotype_parsing_and_deleting_spec.rb
  - phenotype_number_of_users_spec.rb
  - plos_details_spec.rb
  - recommend_phenotypes_spec.rb
  - recommend_variations_spec.rb
- - user_mailer_spec.rb
- - application_record_spec.rb
  - phenotype_spec.rb
  - snpedia_paper_spec.rb
- - das_spec.rb
  - phenotypes_spec.rb
  - snp_details_spec.rb
  - snps_spec.rb
- - data_zipper_service_spec.rb
- - upsert_user_snps_spec.rb
- - authlogic.rb
  - capybara_config.rb
  - patch.rb
  - vcr_setup.rb
- - data_zipper_worker_spec.rb
  - parsing_spec.rb
  - update_papers_spec.rb
  - zip_genotyping_files_spec.rb
- spec_helper.rb
- - 23andMe_test.csv
  - 23andmeexome_test.csv
  - ancestry_test.csv
  - deCODEme_test.csv
  - email_list.csv
  - ftdna-illumina_sample.csv
  - GenesForGood_test.csv
  - iyg_sample.csv
  - plos_search_response.xml
- - .gitkeep
- - beacon_controller_test.rb
  - genotypes_controller_test.rb
  - news_controller_test.rb
  - snps_controller_test.rb
  - user_sessions_controller_test.rb
  - users_controller_test.rb
- - genome_gov_test.rb
  - genotype_test.rb
  - mendeley_search_test.rb
  - message_test.rb
  - plos_search_test.rb
  - snp_reference_test.rb
  - snp_test.rb
  - snpedia_test.rb
  - user_session_test.rb
- test_helper.rb
- 100k
- decode_small.txt
- deCODEme_scan.csv
- exome.vcf
- foo.txt
- only_23andme.txt
- testdatensatz1_23andme.txt
- testdatensatz2_23andme.txt
- testdatensatz3_23andme.txt
- testdatensatz4_23andme.txt
- .gitkeep
.env.development
.env.test
.gitignore
.hound.yml
.jshintignore
.rspec
.rubocop.yml
.ruby-gemset
.ruby-version
.travis.yml
Capfile
CITATION.md
CODE_OF_CONDUCT.md
config.ru
CONTRIBUTING.md
Gemfile
Gemfile.lock
Guardfile
INSTALL.md
LICENSE.md
marshalled_snpedia_array
Procfile
Rakefile
README.md
ROADMAP.md
serverscript
turnoffserver

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