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A public repository of materials for the SISRIS project, "Supporting inclusive and sustainable research infrastructure for systematics (SISRIS) by connecting scientists and their specimens". (NSF #2247631 & #2247632). Material on this site, exclusive of presentation files, is shared under the Creative Commons license CC BY 4.0.

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# What is SISRIS?
<img align="left" width="200" height="200" src="https://user-images.githubusercontent.com/19411979/222419960-80c9dabc-5021-4c2a-aadf-7a5ca2c04a5f.jpg">

The project, "Supporting inclusive and sustainable research infrastructure for systematics (SISRIS) by connecting scientists and their specimens" is supported by a [conference grant from the US National Science Foundation](https://www.nsf.gov/awardsearch/showAward?AWD_ID=2247631&HistoricalAwards=false) to Dr. Andrea Weeks (George Mason University; Ted R. Bradley Herbarium), and Drs. Shawn Zeringue-Krosnick and Twanelle Majors (Tennessee Tech University; Hollister Herbarium). It supports US-based workshops and symposia during 2023 and 2024 that 1) share new practices that improve attribution of natural history specimens and 2) highlight research advances in systematics that can be made as a consequence of improved people-data within biodiversity informatics databases.
<img align="right" width="120" height="120" src="https://user-images.githubusercontent.com/19411979/211927315-e306bf29-fc6d-433a-8b59-7afb34a841e6.png">

The outcomes from 2023 SISRIS workshop and symposium series are published here:

Weeks A, Collins E, Majors TW, Murrell ZE, Paul DL, Sheik M, Shorthouse DP, Zeringue-Krosnick S (2024) Workshop Report: Supporting inclusive and sustainable collections-based research infrastructure for systematics (SISRIS). Research Ideas and Outcomes 10: e126532. [https://doi.org/10.3897/rio.10.e126532](https://doi.org/10.3897/rio.10.e126532).

# How can I participate in SISRIS?

Registration for SISRIS sponsored 2023 and 2024 workhops is now closed.

A video recording of the August 6, 2023 online workshop can be viewed here:

Paul, D. L., Shorthouse, D. P., Weeks, A., Zeringue Krosnick, S. E., & Majors, T. W. (2023, August 6). Online Workshop for Supporting Inclusive and Sustainable Research Infrastructure for Systematics by Connecting Scientists and their Specimens. Zenodo. [https://doi.org/10.5281/zenodo.8219649](https://doi.org/10.5281/zenodo.8219649)

Inquiries about SISRIS may be directed to SISRIS2023[at]gmail[dot]com.

# Workshops (in reverse chronological order)

## Workshop Schedule at [Botany 2024](https://2024.botanyconference.org/) (Sunday June 16, 2024; Grand Rapids, Michigan) (in-person only)
* 8:00-8:10 am: Welcome and logistics
* 8:10-8:30 am Introductory remarks
* 8:30-9:45 am: Hands-on: Participants disambiguate names of collectors from underrepresented groups on the Bionomia platform and learn how to _pay-it-forward_.
* 9:45-10:15 am: Break
* 10:15-11:25 am: Hands-on: Participants document their own expertise and research contributions to
biological research collections using Bionomia, learn how to use additional tools to augment their curriculum
vitae and future publications, and learn how to track collection-level research impact.
* 11:25-11:45 am: Wikidata (optional) and WrapUp.
* 11:45-12:00 pm: Hands-on: Participants complete online workshop survey that will be emailed to each person.
* 12:00 pm: Adjourn

## 2023 Online Workshop Schedule (Sunday August 6, 2023; Eastern Daylight Time/GMT-4 timezone)
* 9:00-9:10 am: Welcome and logistics
* 9:10-9:30 am Introductory remarks
* 9:30-10:45 am: Hands-on: Participants disambiguate names of collectors from underrepresented groups on the Bionomia platform and learn how to _pay-it-forward_.
* 10:45-11:15 am: Break
* 11:15-12:25 pm: Hands-on: Participants document their own expertise and research contributions to
biological research collections using Bionomia, learn how to use additional tools to augment their curriculum
vitae and future publications, and learn how to track collection-level research impact.
* 12:25-12:45 pm: Wikidata (optional) and WrapUp.
* 12:45-11:00 pm: Hands-on: Participants complete online workshop survey that will be emailed to each person.
* 1:00 pm: Adjourn
  
## Workshop Schedule at [Botany 2023](https://2023.botanyconference.org/) (Sunday July 23, 2023; Boise, Idaho) (in-person only)
* 8:00-8:10 am: Welcome and logistics
* 8:10-8:30 am Introductory remarks
* 8:30-9:45 am: Hands-on: Participants disambiguate names of collectors from underrepresented groups on the Bionomia platform and learn how to _pay-it-forward_.
* 9:45-10:15 am: Break
* 10:15-11:25 am: Hands-on: Participants document their own expertise and research contributions to
biological research collections using Bionomia, learn how to use additional tools to augment their curriculum
vitae and future publications, and learn how to track collection-level research impact.
* 11:25-11:45 am: Wikidata (optional) and WrapUp.
* 11:45-12:00 pm: Hands-on: Participants complete online workshop survey that will be emailed to each person.
* 12:00 pm: Adjourn

## Workshop Schedule at the 2023 Annual Meeting of the [Association of Southeastern Biologists](https://www.sebiologists.org/asb-2023.html) (Friday March 24, 2023; Winston-Salem, North Carolina) (in-person only)
* 1:30-1:40 pm: Welcome and logistics
* 1:40-2:00 pm: Introductory remarks
* 2:00–3:15 pm: Hands-on: Participants disambiguate names of collectors from underrepresented groups on the Bionomia platform
* 3:15–3:45 pm: Break
* 3:45–5:05 pm: Hands-on: Participants document their own expertise and research contributions to
biological research collections using Bionomia, learn how to use additional tools to augment their curriculum
vitae and future publications, and learn how to track collection-level research impact.
* 5:05–5:10 pm: Next steps and concluding remarks about how to amplify this effort after the workshop.
* 5:10–5:30 pm: Hands-on: Participants complete online workshop survey that will be emailed to each person.
* 5:30 pm: Adjourn
 
## Pre-Workshop Homework (estimated time for completion: 60 min)
1. Skim open-access paper [Groom et al. (2020)](https://doi.org/10.1093/database/baaa072) for an overview of why disambiguating the names of collectors and identifiers of biological specimens is important for advancing scientific research and for increasing professional recognition of taxonomic expertise.
2. Watch first 31 minutes of a [You-Tube video](https://www.youtube.com/watch?v=PL_feKhrwMQ) from a prior Bionomia workshop about bat specimens, as a case study explaining concepts and terminology in biodiversity informatics and Bionomia that relate to "people-data". This will allow you to hit the ground running in the upcoming workshop.
3. Set your ORCID profile to "Public".
4. Sign up as a user on [Bionomia](https://bionomia.net/) using your ORCID ID number.
5. Bring your laptop to the workshop.
6. Bring your questions.

## Workshop Materials
1. Link to Our Data Set in an [editable Google Sheet](https://docs.google.com/spreadsheets/d/18g8jUAF1KLwavRz1DRTeGxjS-kWokJB5ScT7KqfxKko/edit?usp=sharing) containing some names of historical botanical collectors in the US who have digitized specimen data posted to GBIF and who are available on Bionomia for disambiguation during the workshop. Note: this list is not exhaustive.
2. [PDF of how-to directions](https://github.com/aweeks3/SISRIS/blob/main/documents/bionomia-for-sisris-v0-24March2023.pdf) that reiterate workshop workflow (e.g. historical attribution, claiming one's specimens, reporting institutional metrics, importing unique collector ID's back into your institution's DB). [Zenodo DOI to latest version](https://doi.org/10.5281/zenodo.7767332)
3. [ASB 2023 Group Notes](https://docs.google.com/document/d/1962RgOCpEBIr96Z-OxRmARvjutaz_EI75komWWGw2ZU/edit?usp=sharing) for SISRIS Workshop.
4. [Botany 2023 Group Notes](https://docs.google.com/document/d/173oD6YUpkvSkVa90GC16R9ZwnByQT6elUMU02dsq7xM/edit?usp=sharing) for SISRIS Workshop.
5. [Online SISRIS Workshop Group Notes](https://docs.google.com/document/d/1iJb8zasTkr0IJ8rna0ikH4RqzKN49qmx4enzomLD2DU/edit?usp=sharing) for 6 August 2023.
6. [Botany 2024 Group Notes](https://docs.google.com/document/d/1XIMY8aNIXFSzEdOAbUnYq6fkajb4tc4pPBtu-8pPo-0/edit?usp=sharing) for SISRIS Workshop 16 June 2024.

# Invited Symposia

## Presentations at [Botany 2023](https://2023.botanyconference.org/) (Wednesday July 26, 8 am - 12 pm; Boise, Idaho), sponsored by the [Society of Herbarium Curators](https://www.herbariumcurators.org/) within their Special Lecture session of the conference program.
* **David Shorthouse** (Bionomia). "Connecting scientists and their specimens through Bionomia."
* **Deborah L Paul** (University of Illinois). "Discovering together "who dunnit?": building a borderless knowledge community." 
* **Erica Krimmel**, Holly Little. "People in the biodiversity knowledge graph and their roles in building the data connections we need."
  * Slides as [PDF on Zenodo](https://doi.org/10.5281/zenodo.8174678)
* **Katie Pearson** (Symbiota Support Hub), Ed Gilbert, Jenn Yost, Greg Post, and Nico Franz. "Even more hidden figures in biodiversity specimen collections: Tracking agent contributions in Symbiota."
* **Herrick Brown** (Univerity of South Carolina), Zack Murrell, Michael Denslow, Andrea Weeks and Shawn Krosnick. "Strategies to enhance and sustain an established cyberinfrastructure." 
* **Jessica Budke** (University of Tennessee-Knoxville), Hannah Bendull, and Robin Lewis. "The State of Herbarium Backlogs: Perspectives from Bryophyte Collections."
* **Rebecca Dikow** (Smithsonian Institution), Jenna T. B. Ekwealor, William J. B. Mattingly, Michael G. Trizna, Elizabeth Harmon, Torsten Dikow, Carlos F. Arias, Richard G. J. Hodel, Jennifer Spillane, Mirian T. N. Tsuchiya, Luis Villanueva, Alexander E. White, Madeline G. Bursell, Tiana Curry, Christelle Inema, and Kayla Geronimo-Anctil. "Let the records show: attribution of scientific credit in natural history collections."
* **Andrea Weeks** (George Mason University). "An exception proves the rule: Lena Artz (1891–1976) and her legacy of botanical specimens."
  * Slides as [PDF and MP4 recording on Zenodo](https://doi.org/10.5281/zenodo.7799575)  
* **Janelle Burke** (Howard University), Dominique Pittman-Kidd and Daniel Koenemann. "Prolific plant collectors and the HBCU legacy: Charles Parker as a case study." 
* **Shawn Zeringue-Krosnick** (Tennessee Tech University), Olubunmi Aina, Adania Flemming, Molly Phillips, Jennifer Kovacs, 
Siobhan Leachman, and Makenzie E. Mabry. "Digital data sleuthing and storytelling as tools to engage students with the unsung heroes of natural history collections."

## Presentations at the 2023 Annual Meeting of the [Association of Southeastern Biologists](https://www.sebiologists.org/asb-2023.html) (Saturday March 25, 2023; Winston-Salem, North Carolina)
* **Deborah L Paul** (University of Illinois). "Discovering together "who dunnit?": building a borderless knowledge community." 
  * Slides as [PDF on Zenodo](https://doi.org/10.5281/zenodo.7796330)
* **David Shorthouse** (Bionomia). "Connecting scientists and their specimens through Bionomia."
  * Slides as [PDF on Git Hub](https://github.com/aweeks3/SISRIS/blob/main/presentations/Shorthouse_Bionomia.pdf)
* **Shawn Zeringue-Krosnick** (Tennessee Tech University), Olubunmi Aina, Adania Flemming, Molly Phillips, Jennifer Kovacs, 
Siobhan Leachman, and Makenzie E. Mabry. "Digital data sleuthing and storytelling as tools to engage students with the unsung heroes of natural history collections."
  * Slides as [PDF on QUBES Hub](http://dx.doi.org/10.25334/FP7P-V513)
* **Andrea Weeks** (George Mason University). "An exception proves the rule: Lena Artz (1891–1976) and her legacy of botanical specimens."   
  * Slides as [PDF on Zenodo](https://doi.org/10.5281/zenodo.7799575)
* **Carol Ann McCormick** (The University of North Carolina). "Delving into the lives of herbarium collectors."
  * Slides as [PDF on Git Hub](https://github.com/aweeks3/SISRIS/blob/main/presentations/McCormickASB2023.pdf)
* **Daniel Koenemann** (Claflin University), Janelle Burke. "Prolific plant collectors and the HBCU legacy: Charles Parker as a case study." 
* **Pamela Puppo** (Marshall University), Lori Thompson, and Lindsey Harper. "Uncovering hidden figures at the Marshall University Herbarium through inter-disciplinary collaborations." 
  * Slides as [PDF on Git Hub](https://github.com/aweeks3/SISRIS/blob/main/presentations/Puppo_MUHW_SISRIS%20Symposium_ASB2023.pdf)
* **Robin Lewis** (Spartanburg Community College), Hannah Bendull, and **Jessica Budke**. "The State of Herbarium Backlogs: Perspectives from Bryophyte Collections."
* **Zack Murrell** (Appalachian State Univerity), Michael Denslow, Herrick Brown, Andrea Weeks and Shawn Krosnick. "Strategies to enhance and sustain an established cyberinfrastructure." 
# Related Readings and Other Resources:

*  Bauer J, Burkhalter R, Karim T, Krimmel E, Landis M, Leachman S, Little H, Lorente M, Mills SK, Neu-Yagle N, Norton B, Paul D, Shorthouse D, Utrup J, Van Veldhuizen J, and Walker L. 2022. Guidelines for Using Wikidata to Mobilize Information about People in Collections: A Paleontology Perspective. https://doi.org/10.5281/zenodo.6977243 (See [TDWG 2022 abstract](https://doi.org/10.3897/biss.5.74370))
   * _View a formatted version of this document at https://paleo-data.github.io/guidelines-wikidata-people_
* Biodiversity Collections Network (BCN). 2019. Extending U.S. biodiversity collections to promote research and education. American Institute of Biological Sciences, Washington, DC.
* Bionomia. 2022. Bionomia. Website https://bionomia.net/
* Rebecca Dikow, Jenna T. B. Ekwealor, William J. B. Mattingly, Michael G. Trizna, Elizabeth Harmon, Torsten Dikow, Carlos F. Arias, Richard G. J. Hodel, Jennifer Spillane, Mirian T. N. Tsuchiya, Luis Villanueva, Alexander E. White, Madeline G. Bursell, Tiana Curry, Christelle Inema, and Kayla Geronimo-Anctil. 2023. Let the records show: attribution of scientific credit in natural history collections. International Journal of Plant Sciences. https://doi.org/10.1086/724949
* European Organization For Nuclear Research, and OpenAIRE. 2013. Zenodo: Research. Shared.
https://doi.org/10.25495/7gxk-rd71
* GBIF. 2022. Global biodiversity informatics facility. Website https://www.gbif.org/ 
* Grace, O. M., O. A. Pérez-Escobar, E. J. Lucas, M. S. Vorontsova, G. P. Lewis, B. E. Walker, L. G. Lohmann, et al. 2021. Botanical monography in the Anthropocene. Trends in Plant Science 26: 433–441. https://doi.org/10.1016/j.tplants.2020.12.018
* Q. J. Groom, C. O’Reilly & T. Humphrey (2014) Herbarium specimens reveal the exchange network of British and Irish botanists, 1856–1932, New Journal of Botany, 4:2, 95-103, https://doi.org/10.1179/2042349714Y.0000000041 
* Groom, Q., A. Güntsch, P. Huybrechts, N. Kearney, S. Leachman, N. Nicolson, R. D. M. Page, et al. 2020. People are essential to linking biodiversity data. Database 2020: baaa072. https://doi.org/10.1093/database/baaa072
* Groom Q, Bräuchler C, Cubey RWN, Dillen M, Huybrechts P, Kearney N, Klazenga N, Leachman S, Paul DL, Rogers H, Santos J, Shorthouse DP, Vaughan A, von Mering S, Haston EM (2022) The disambiguation of people names in biological collections. Biodiversity Data Journal 10: e86089. https://doi.org/10.3897/BDJ.10.e86089. 
* Güntsch, A., Q. Groom, M. Ernst, J. Holetschek, A. Plank, D. Röpert, D. Fichtmüller, et al. 2021. A botanical demonstration of the potential of linking data using unique identifiers for people. PLOS ONE16: e0261130. https://doi.org/10.1371/journal.pone.0261130
* Krimmel E, Karim T, Little H, Walker LJ, Burkhalter R, Byrd C, Millhouse A, Utrup J (2021) The Paleo Data Working Group: A model for developing and sustaining a community of practice. Biodiversity Information Science and Standards 5: e74370. https://doi.org/10.3897/biss.5.74370 (see [link to related presentation slide deck](https://biss.pensoft.net/article/74370/download/media/627091/))
* Leachman, S. 2020. Wikidata notes for bat collectors. Zenodo. https://doi.org/10.5281/zenodo.4724139 
* Mabry, M. E., F. Zapata, D. L. Paul, P. M. O’Connor, P. S. Soltis, D. C. Blackburn, and N. B. Simmons. 2022. Monographs as a nexus for building extended specimen networks using persistent identifiers. Bulletin of the Society of Systematic Biologists 1. https://doi.org/10.18061/bssb.v1i1.8323
* McDade, L. A., D. R. Maddison, R. Guralnick, H. A. Piwowar, M. L. Jameson, K. M. Helgen, P. S. Herendeen, et al. 2011. Biology needs a modern assessment system for professional productivity. BioScience 61: 619–625. https://doi.org/10.1525/bio.2011.61.8.8
* Nicolson, N., Tucker, A. (2017). Identifying Novel Features from Specimen Data for the Prediction of Valuable Collection Trips. In: Adams, N., Tucker, A., Weston, D. (eds) Advances in Intelligent Data Analysis XVI. IDA 2017. Lecture Notes in Computer Science(), vol 10584. Springer, Cham. https://doi.org/10.1007/978-3-319-68765-0_20
* ORCID. 2022. Open Researcher and Contributor ID. Website https://orcid.org/ 
* Prather, L. A., O. Alvarez-Fuentes, M. H. Mayfield, and C. J. Ferguson. 2004. The decline of plant collecting in the United States: A threat to the infrastructure of biodiversity studies. Systematic Botany 29: 15–28. https://doi.org/10.1600/036364404772974185
* Rohwer, V. G., Y. Rohwer, and C. B. Dillman. 2022. Declining growth of natural history collections fails future generations. PLOS Biology 20: e3001613. https://doi.org/10.1371/journal.pbio.3001613
* Shorthouse, David P., Goodwin, Zoë, and Samanta Orellana, K. 2022. Zenodo enables a new workflow for collectors of natural history specimens. Zenodo. https://doi.org/10.5281/zenodo.6761723
* Thessen, A. E., M. Woodburn, D. Koureas, D. Paul, M. Conlon, D. P. Shorthouse, and S. Ramdeen. 2019. Proper attribution for curation and maintenance of research collections: Metadata recommendations of the RDA/TDWG working group. Data Science Journal 18: 54. https://doi.org/10.5334/dsj-2019-054
* Webster, M. S. 2017. The extended specimen. The Extended Specimen: Emerging frontiers in collections-
based ornithological research, Studies in Avian Biology, 1–9. CRC Press, Boca Raton, FL. https://doi.org/10.1201/9781315120454
* Wikidata. 2022. Wikidata. Website https://www.wikidata.org/wiki/Wikidata:Main_Page

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