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MCP Chatbot powered by Anthropic Claude. Delivering on‐demand literature search and summarisation for academics and engineers

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# mcp-chatbot

A modular, async research assistant that combines **Anthropic Claude 3** with the **Model Context Protocol (MCP)**, delivering on‐demand literature search and summarisation for academics and engineers.

---

## 1. Project Structure

```bash
mcp-chatbot/
├── Dockerfile
├── pyproject.toml
├── uv.lock
├── README.md
├── server_config.json
├── research_server.py
├── papers/                  # Cached paper metadata by topic
├── mcp_chatbot/
│   ├── __init__.py
│   ├── cli.py               # Typer-based CLI
│   └── core.py              # Main chatbot engine
└── tests/
    └── test_core.py
```

## 2. Quick Start

### 2.1. Clone the Repository

```bash
git clone https://github.com/mctrinh/mcp-chatbot.git
cd mcp-chatbot
```

### 2.2. Install Dependencies

#### Install `uv` (recommended)
```bash
# Git Bash or WSL on Windows, doesn't work in standard Command Prompt or PowerShell
curl -LsSf https://astral.sh/uv/install.sh | sh

# Scoop (Windows)
scoop install uv

# Chocolatey (Windows - Administrator Command Prompt - Recommended)
choco install uv
uv --version
```

#### Install Python packages in `project.dependencies` in `pyproject.toml`
```bash
pip install -e .
```

## 3. Build and Run with Docker
```bash
# Build image
docker build -t mcp-chatbot:0.1 .

# Run server and CLI (ports 8001 and 8000)
docker run --rm -it -p 8001:8001 -p 8000:8000 mcp-chatbot:0.1
```

## 4. Run Without Docker (Local Dev)
```bash
# Install dependencies
uv pip install -e .[dev]

# Start the research server (MCP tool)
python research_server.py

# In a new terminal, launch the chatbot CLI
mcp-chatbot run
```

## 5. Try the Chatbot

### 5.1. REPL Mode
```bash
python -m mcp_chatbot.cli run
```
Or using the installed script:
```bash
mcp-chatbot run
```
Once inside the REPL (Read-Eval-Print Loop), you can interact with the chatbot directly by typing commands or queries. Example commands:
```bash
/prompts            # list Claude prompts
@folders            # list downloaded paper topics
AI alignment        # ask anything – Claude decide whether to invoke tools
```

### 5.2. One-shot Query
```bash
mcp-chatbot once "What are the latest trends in diffusion models?"
```

## 6. Configuration (Optional)
Environment variables and `server_config.json` control model and ports:
```bash
export ANTHROPIC_MODEL="claude-3-opus-20240229"
export RESEARCH_PORT=8001
export PAPER_DIR=./papers
```

## 7. Testing

```bash
# Installs pytest, coverage, etc.
uv pip install -e .[dev]

# Run unit tests
pytest -q

# With coverage (optional)
pytest --cov=mcp_chatbot
```

## 8. Road map
- Research MCP server with `search_papers` and `extract_info` (done)

- Tool usage via Claude 3 (done)

- Prompt orchestration (done)

- Vector search over stored papers (Faiss / Chroma)

- Web UI using FastAPI + React

- GitHub Actions for CI/CD

## 10. Current Issues

Issues occur when running ```mcp-chatbot run```

- <span style="color:red;">⚠ Could not connect to server 'fetch': Method not found</span>
- <span style="color:red;">⚠ Could not connect to server 'filesystem': Method not found</span>

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