ugene
UGENE is free open-source cross-platform bioinformatics software
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- CODEOWNERS
- FUNDING.yml
- CollectTranslations.cmake
- Common.cmake
- Environment.cmake
- Plugin.cmake
- PluginDescriptor.cmake
- Version.cmake
- NexteraPE-PE.fa
- TruSeq2-PE.fa
- TruSeq2-SE.fa
- TruSeq3-PE-2.fa
- TruSeq3-PE.fa
- TruSeq3-SE.fa
- adapters.fasta
- Arthrobacter_aurescens_TC1.cut
- Bacillus_subtilis.cut
- Escherichia_coli.cut
- Haemophilus_influenzae.cut
- Helicobacter_pylori.cut
- Listeria_monocytogenes.cut
- Neisseria_meningitidis.cut
- Salmonella_typhimurium_LT2.cut
- Streptomyces_coelicolor_A3(2).cut
- Sulfolobus_solfataricus_P2.cut
- Apis_mellifera_(honey_bee).cut
- Caenorhabditis_elegans.cut
- Drosophila_melanogaster_(fruit_fly).cut
- mitochondrion_Caenorhabditis_elegans.cut
- mitochondrion_Drosophila_melanogaster_(fruit_fly).cut
- Plasmodium_falciparum_(malaria_parasite_P._falciparum).cut
- Bos_taurus_(cow).cut
- Canis_familiaris_(dog).cut
- mitochondrion_Bos_taurus_(cow).cut
- mitochondrion_Sus_scrofa_(pig).cut
- Sus_scrofa_(pig).cut
- Arabidopsis_thaliana_(thale_cress).cut
- Oryza_sativa.cut
- Zea_mays.cut
- Homo_sapiens_(human).cut
- mitochondrion_Homo_sapiens_(human).cut
- mitochondrion_Pan_troglodytes_(chimpanzee).cut
- Pan_troglodytes_(chimpanzee).cut
- Mus_musculus_(house_mouse).cut
- Rattus_norvegicus_(Norway_rat).cut
- Gallus_gallus_(chicken).cut
- mitochondrion_Gallus_gallus_(chicken).cut
- mitochondrion_Takifugu_rubripes_(Fugu_rubripes).cut
- Takifugu_rubripes_(Fugu_rubripes).cut
- Xenopus_laevis_(African_clawed_frog).cut
- Human_immunodeficiency_virus_1_(HIV-1).cut
- Influenza_A_virus.cut
- Saccharomyces_cerevisiae_(baker's_yeast).cut
- tables.xml
- BioStruct3DLinks.txt
- align-clustalo.uwl
- align-clustalw.uwl
- align-kalign.uwl
- align-mafft.uwl
- align-to-reference.uwl
- align.uwl
- convert-msa.uwl
- convert-seq.uwl
- extract-sequence.uwl
- extract_consensus_sequence.uwl
- extract_consensus_string.uwl
- extract_coverage.uwl
- fetch-sequence.uwl
- find-orfs.uwl
- find-repeats.uwl
- find-sw.uwl
- gene-by-gene.uwl
- generate-dna.uwl
- hmm2-build.uwl
- hmm2-search.uwl
- hmm3-build-and-search.uwl
- hmm3-search.uwl
- join-quality.uwl
- local-blast.uwl
- pfm-build.uwl
- pfm-search.uwl
- pwm-build.uwl
- pwm-search.uwl
- query.uwl
- remote-request.uwl
- revcompl.uwl
- sitecon-build.uwl
- sitecon-search.uwl
- snp.uwl
- plasmid_features.txt
- 2023_02_25.bairoch.gz
- danRer7.genome
- ecoli.genome
- hg18.genome
- hg19.genome
- mm10.genome
- mm8.genome
- mm9.genome
- test.genome
- MA0265.1.pfm
- MA0266.1.pfm
- MA0267.1.pfm
- MA0268.1.pfm
- MA0269.1.pfm
- MA0270.1.pfm
- MA0271.1.pfm
- MA0272.1.pfm
- MA0273.1.pfm
- MA0274.1.pfm
- MA0275.1.pfm
- MA0276.1.pfm
- MA0277.1.pfm
- MA0278.1.pfm
- MA0279.1.pfm
- MA0280.1.pfm
- MA0281.1.pfm
- MA0282.1.pfm
- MA0283.1.pfm
- MA0284.1.pfm
- MA0285.1.pfm
- MA0286.1.pfm
- MA0287.1.pfm
- MA0288.1.pfm
- MA0289.1.pfm
- MA0290.1.pfm
- MA0291.1.pfm
- MA0292.1.pfm
- MA0293.1.pfm
- MA0294.1.pfm
- MA0295.1.pfm
- MA0296.1.pfm
- MA0297.1.pfm
- MA0298.1.pfm
- MA0299.1.pfm
- MA0300.1.pfm
- MA0301.1.pfm
- MA0302.1.pfm
- MA0303.1.pfm
- MA0304.1.pfm
- MA0305.1.pfm
- MA0306.1.pfm
- MA0307.1.pfm
- MA0308.1.pfm
- MA0309.1.pfm
- MA0310.1.pfm
- MA0311.1.pfm
- MA0312.1.pfm
- MA0313.1.pfm
- MA0314.1.pfm
- MA0315.1.pfm
- MA0316.1.pfm
- MA0317.1.pfm
- MA0318.1.pfm
- MA0319.1.pfm
- MA0320.1.pfm
- MA0321.1.pfm
- MA0322.1.pfm
- MA0323.1.pfm
- MA0324.1.pfm
- MA0325.1.pfm
- MA0326.1.pfm
- MA0327.1.pfm
- MA0328.1.pfm
- MA0329.1.pfm
- MA0330.1.pfm
- MA0331.1.pfm
- MA0332.1.pfm
- MA0333.1.pfm
- MA0334.1.pfm
- MA0335.1.pfm
- MA0336.1.pfm
- MA0337.1.pfm
- MA0338.1.pfm
- MA0339.1.pfm
- MA0340.1.pfm
- MA0341.1.pfm
- MA0342.1.pfm
- MA0343.1.pfm
- MA0344.1.pfm
- MA0345.1.pfm
- MA0346.1.pfm
- MA0347.1.pfm
- MA0348.1.pfm
- MA0349.1.pfm
- MA0350.1.pfm
- MA0351.1.pfm
- MA0352.1.pfm
- MA0353.1.pfm
- MA0354.1.pfm
- MA0355.1.pfm
- MA0356.1.pfm
- MA0357.1.pfm
- MA0358.1.pfm
- MA0359.1.pfm
- MA0360.1.pfm
- MA0361.1.pfm
- MA0362.1.pfm
- MA0363.1.pfm
- MA0364.1.pfm
- MA0365.1.pfm
- MA0366.1.pfm
- MA0367.1.pfm
- MA0368.1.pfm
- MA0369.1.pfm
- MA0370.1.pfm
- MA0371.1.pfm
- MA0372.1.pfm
- MA0373.1.pfm
- MA0374.1.pfm
- MA0375.1.pfm
- MA0376.1.pfm
- MA0377.1.pfm
- MA0378.1.pfm
- MA0379.1.pfm
- MA0380.1.pfm
- MA0381.1.pfm
- MA0382.1.pfm
- MA0383.1.pfm
- MA0384.1.pfm
- MA0385.1.pfm
- MA0386.1.pfm
- MA0387.1.pfm
- MA0388.1.pfm
- MA0389.1.pfm
- MA0390.1.pfm
- MA0391.1.pfm
- MA0392.1.pfm
- MA0393.1.pfm
- MA0394.1.pfm
- MA0395.1.pfm
- MA0396.1.pfm
- MA0397.1.pfm
- MA0398.1.pfm
- MA0399.1.pfm
- MA0400.1.pfm
- MA0401.1.pfm
- MA0402.1.pfm
- MA0403.1.pfm
- MA0404.1.pfm
- MA0405.1.pfm
- MA0406.1.pfm
- MA0407.1.pfm
- MA0408.1.pfm
- MA0409.1.pfm
- MA0410.1.pfm
- MA0411.1.pfm
- MA0412.1.pfm
- MA0413.1.pfm
- MA0414.1.pfm
- MA0415.1.pfm
- MA0416.1.pfm
- MA0417.1.pfm
- MA0418.1.pfm
- MA0419.1.pfm
- MA0420.1.pfm
- MA0421.1.pfm
- MA0422.1.pfm
- MA0423.1.pfm
- MA0424.1.pfm
- MA0425.1.pfm
- MA0426.1.pfm
- MA0427.1.pfm
- MA0428.1.pfm
- MA0429.1.pfm
- MA0430.1.pfm
- MA0431.1.pfm
- MA0432.1.pfm
- MA0433.1.pfm
- MA0434.1.pfm
- MA0435.1.pfm
- MA0436.1.pfm
- MA0437.1.pfm
- MA0438.1.pfm
- MA0439.1.pfm
- MA0440.1.pfm
- MA0441.1.pfm
- matrix_list.txt
- MA0010.1.pfm
- MA0011.1.pfm
- MA0012.1.pfm
- MA0013.1.pfm
- MA0015.1.pfm
- MA0016.1.pfm
- MA0022.1.pfm
- MA0023.1.pfm
- MA0026.1.pfm
- MA00445.1.pfm
- MA0049.1.pfm
- MA0085.1.pfm
- MA0086.1.pfm
- MA0094.2.pfm
- MA0126.1.pfm
- MA0165.1.pfm
- MA0166.1.pfm
- MA0167.1.pfm
- MA0168.1.pfm
- MA0169.1.pfm
- MA0170.1.pfm
- MA0171.1.pfm
- MA0172.1.pfm
- MA0173.1.pfm
- MA0174.1.pfm
- MA0175.1.pfm
- MA0176.1.pfm
- MA0177.1.pfm
- MA0178.1.pfm
- MA0179.1.pfm
- MA0180.1.pfm
- MA0181.1.pfm
- MA0182.1.pfm
- MA0183.1.pfm
- MA0184.1.pfm
- MA0185.1.pfm
- MA0186.1.pfm
- MA0187.1.pfm
- MA0188.1.pfm
- MA0189.1.pfm
- MA0190.1.pfm
- MA0191.1.pfm
- MA0192.1.pfm
- MA0193.1.pfm
- MA0194.1.pfm
- MA0195.1.pfm
- MA0196.1.pfm
- MA0197.1.pfm
- MA0198.1.pfm
- MA0199.1.pfm
- MA0200.1.pfm
- MA0201.1.pfm
- MA0202.1.pfm
- MA0203.1.pfm
- MA0204.1.pfm
- MA0205.1.pfm
- MA0206.1.pfm
- MA0207.1.pfm
- MA0208.1.pfm
- MA0209.1.pfm
- MA0210.1.pfm
- MA0211.1.pfm
- MA0212.1.pfm
- MA0213.1.pfm
- MA0214.1.pfm
- MA0215.1.pfm
- MA0216.1.pfm
- MA0217.1.pfm
- MA0218.1.pfm
- MA0219.1.pfm
- MA0220.1.pfm
- MA0221.1.pfm
- MA0222.1.pfm
- MA0223.1.pfm
- MA0224.1.pfm
- MA0225.1.pfm
- MA0226.1.pfm
- MA0227.1.pfm
- MA0228.1.pfm
- MA0229.1.pfm
- MA0230.1.pfm
- MA0231.1.pfm
- MA0232.1.pfm
- MA0233.1.pfm
- MA0234.1.pfm
- MA0235.1.pfm
- MA0236.1.pfm
- MA0237.1.pfm
- MA0238.1.pfm
- MA0239.1.pfm
- MA0240.1.pfm
- MA0241.1.pfm
- MA0242.1.pfm
- MA0243.1.pfm
- MA0244.1.pfm
- MA0245.1.pfm
- MA0246.1.pfm
- MA0247.1.pfm
- MA0248.1.pfm
- MA0249.1.pfm
- MA0250.1.pfm
- MA0251.1.pfm
- MA0252.1.pfm
- MA0253.1.pfm
- MA0254.1.pfm
- MA0255.1.pfm
- MA0256.1.pfm
- MA0257.1.pfm
- MA0443.1.pfm
- MA0444.1.pfm
- MA0446.1.pfm
- MA0447.1.pfm
- MA0448.1.pfm
- MA0449.1.pfm
- MA0450.1.pfm
- MA0451.1.pfm
- MA0452.1.pfm
- MA0453.1.pfm
- MA0454.1.pfm
- MA0455.1.pfm
- MA0456.1.pfm
- MA0457.1.pfm
- MA0458.1.pfm
- MA0459.1.pfm
- MA0460.1.pfm
- matrix_list.txt
- MA0260.1.pfm
- MA0261.1.pfm
- MA0262.1.pfm
- MA0263.1.pfm
- MA0264.1.pfm
- matrix_list.txt
- MA0001.1.pfm
- MA0005.1.pfm
- MA0008.1.pfm
- MA0020.1.pfm
- MA0021.1.pfm
- MA0034.1.pfm
- MA0044.1.pfm
- MA0045.1.pfm
- MA0053.1.pfm
- MA0054.1.pfm
- MA0064.1.pfm
- MA0082.1.pfm
- MA0096.1.pfm
- MA0097.1.pfm
- MA0110.1.pfm
- MA0120.1.pfm
- MA0121.1.pfm
- MA0123.1.pfm
- MA0127.1.pfm
- MA0128.1.pfm
- MA0129.1.pfm
- matrix_list.txt
- MA0118.1.pfm
- matrix_list.txt
- MA0002.2.pfm
- MA0003.1.pfm
- MA0004.1.pfm
- MA0006.1.pfm
- MA0007.1.pfm
- MA0009.1.pfm
- MA0014.1.pfm
- MA0017.1.pfm
- MA0018.2.pfm
- MA0019.1.pfm
- MA0024.1.pfm
- MA0025.1.pfm
- MA0027.1.pfm
- MA0028.1.pfm
- MA0029.1.pfm
- MA0030.1.pfm
- MA0031.1.pfm
- MA0032.1.pfm
- MA0033.1.pfm
- MA0035.2.pfm
- MA0036.1.pfm
- MA0037.1.pfm
- MA0038.1.pfm
- MA0039.2.pfm
- MA0040.1.pfm
- MA0041.1.pfm
- MA0042.1.pfm
- MA0043.1.pfm
- MA0046.1.pfm
- MA0047.2.pfm
- MA0048.1.pfm
- MA0050.1.pfm
- MA0051.1.pfm
- MA0052.1.pfm
- MA0055.1.pfm
- MA0056.1.pfm
- MA0057.1.pfm
- MA0058.1.pfm
- MA0059.1.pfm
- MA0060.1.pfm
- MA0061.1.pfm
- MA0062.2.pfm
- MA0063.1.pfm
- MA0065.2.pfm
- MA0066.1.pfm
- MA0067.1.pfm
- MA0068.1.pfm
- MA0069.1.pfm
- MA0070.1.pfm
- MA0071.1.pfm
- MA0072.1.pfm
- MA0073.1.pfm
- MA0074.1.pfm
- MA0075.1.pfm
- MA0076.1.pfm
- MA0077.1.pfm
- MA0078.1.pfm
- MA0079.2.pfm
- MA0080.2.pfm
- MA0081.1.pfm
- MA0083.1.pfm
- MA0084.1.pfm
- MA0087.1.pfm
- MA0088.1.pfm
- MA0089.1.pfm
- MA0090.1.pfm
- MA0091.1.pfm
- MA0092.1.pfm
- MA0093.1.pfm
- MA0095.1.pfm
- MA0098.1.pfm
- MA0099.2.pfm
- MA0100.1.pfm
- MA0101.1.pfm
- MA0102.2.pfm
- MA0103.1.pfm
- MA0104.2.pfm
- MA0105.1.pfm
- MA0106.1.pfm
- MA0107.1.pfm
- MA0108.2.pfm
- MA0109.1.pfm
- MA0111.1.pfm
- MA0112.2.pfm
- MA0113.1.pfm
- MA0114.1.pfm
- MA0115.1.pfm
- MA0116.1.pfm
- MA0117.1.pfm
- MA0119.1.pfm
- MA0122.1.pfm
- MA0124.1.pfm
- MA0125.1.pfm
- MA0130.1.pfm
- MA0131.1.pfm
- MA0132.1.pfm
- MA0133.1.pfm
- MA0135.1.pfm
- MA0136.1.pfm
- MA0137.2.pfm
- MA0138.2.pfm
- MA0139.1.pfm
- MA0140.1.pfm
- MA0141.1.pfm
- MA0142.1.pfm
- MA0143.1.pfm
- MA0144.1.pfm
- MA0145.1.pfm
- MA0146.1.pfm
- MA0147.1.pfm
- MA0148.1.pfm
- MA0149.1.pfm
- MA0150.1.pfm
- MA0151.1.pfm
- MA0152.1.pfm
- MA0153.1.pfm
- MA0154.1.pfm
- MA0155.1.pfm
- MA0156.1.pfm
- MA0157.1.pfm
- MA0158.1.pfm
- MA0159.1.pfm
- MA0160.1.pfm
- MA0161.1.pfm
- MA0162.1.pfm
- MA0163.1.pfm
- MA0164.1.pfm
- MA0258.1.pfm
- MA0259.1.pfm
- MA0442.1.pfm
- matrix_list.txt
- all_jaspar.csv
- Alx3_3418.2.pwm
- Alx4_1744.1.pwm
- Arx_1738.2.pwm
- Bapx1_2343.1.pwm
- Barhl1_2590.2.pwm
- Barhl2_3868.1.pwm
- Barx1_2877.1.pwm
- Barx2_3447.2.pwm
- Bsx_3483.2.pwm
- Cart1_0997.1.pwm
- Cart1_1275.1.pwm
- Cdx1_2245.1.pwm
- Cdx2_4272.1.pwm
- Cphx_3484.1.pwm
- Crx_3485.1.pwm
- Cutl1_3494.1.pwm
- Cutl1_3494.2.pwm
- Dbx1_3486.1.pwm
- Dbx2_3487.1.pwm
- Dlx1_1741.2.pwm
- Dlx2_2273.2.pwm
- Dlx3_1030.1.pwm
- Dlx4_3488.2.pwm
- Dlx5_3419.2.pwm
- Dmbx1_2277.1.pwm
- Dobox4_3956.2.pwm
- Dobox5_3493.1.pwm
- Duxl_1286.2.pwm
- Emx2_3420.1.pwm
- En1_3123.2.pwm
- En2_0952.1.pwm
- Esx1_3124.2.pwm
- Evx1_3952.2.pwm
- Evx2_2645.3.pwm
- Gbx1_2883.2.pwm
- Gbx2_3110.1.pwm
- Gsc_2327.3.pwm
- Gsh2_3990.2.pwm
- Hdx_3845.3.pwm
- Hlx1_2350.1.pwm
- Hlxb9_3422.1.pwm
- Hmbox1_2674.1.pwm
- Hmx1_3423.1.pwm
- Hmx2_3424.3.pwm
- Hmx3_3490.2.pwm
- Homez_1063.2.pwm
- Hoxa10_2318.1.pwm
- Hoxa11_2218.1.pwm
- Hoxa13_3126.1.pwm
- Hoxa1_3425.1.pwm
- Hoxa2_3079.1.pwm
- Hoxa3_2783.2.pwm
- Hoxa4_3426.1.pwm
- Hoxa5_3415.1.pwm
- Hoxa6_1040.1.pwm
- Hoxa7_2668.2.pwm
- Hoxa7_3750.1.pwm
- Hoxa9_2622.2.pwm
- Hoxb13_3479.1.pwm
- Hoxb3_1720.2.pwm
- Hoxb4_2627.1.pwm
- Hoxb5_3122.2.pwm
- Hoxb6_3428.2.pwm
- Hoxb7_3953.1.pwm
- Hoxb8_3780.2.pwm
- Hoxb9_3413.1.pwm
- Hoxc10_2779.2.pwm
- Hoxc11_3718.2.pwm
- Hoxc12_3480.1.pwm
- Hoxc13_3127.1.pwm
- Hoxc4_3491.1.pwm
- Hoxc5_2630.2.pwm
- Hoxc6_3954.2.pwm
- Hoxc8_3429.2.pwm
- Hoxc9_2367.2.pwm
- Hoxd10_2368.2.pwm
- Hoxd11_3873.1.pwm
- Hoxd12_3481.1.pwm
- Hoxd13_2356.1.pwm
- Hoxd1_3448.1.pwm
- Hoxd3_1742.2.pwm
- Hoxd8_2644.1.pwm
- Ipf1_3815.1.pwm
- Irx2_0900.3.pwm
- Irx3_0920.1.pwm
- Irx3_2226.1.pwm
- Irx4_2242.3.pwm
- Irx5_2385.1.pwm
- Irx6_2623.2.pwm
- Isl2_3430.1.pwm
- Isx_3445.1.pwm
- Lbx2_3869.2.pwm
- Lhx1_2240.2.pwm
- Lhx2_0953.2.pwm
- Lhx3_3431.1.pwm
- Lhx4_1719.2.pwm
- Lhx5_2279.1.pwm
- Lhx6_2272.1.pwm
- Lhx6_3432.1.pwm
- Lhx8_2247.2.pwm
- Lhx9_3492.1.pwm
- Lmx1a_2238.2.pwm
- Lmx1b_3433.2.pwm
- Meis1_2335.1.pwm
- Meox1_2310.2.pwm
- Mrg1_2246.2.pwm
- Mrg2_2302.1.pwm
- Msx1_3031.2.pwm
- Msx2_3449.1.pwm
- Msx3_3206.1.pwm
- Nkx1-1_3856.3.pwm
- Nkx1-2_3214.1.pwm
- Nkx2-2_2823.1.pwm
- Nkx2-3_3435.1.pwm
- Nkx2-4_3074.1.pwm
- Nkx2-5_3436.1.pwm
- Nkx2-6_3437.1.pwm
- Nkx2-9_3082.1.pwm
- Nkx3-1_2923.2.pwm
- Nkx6-1_2825.1.pwm
- Nkx6-1_2825.2.pwm
- Nkx6-3_3446.1.pwm
- Obox1_3970.2.pwm
- Obox2_3438.2.pwm
- Obox3_3439.1.pwm
- Obox5_2284.1.pwm
- Obox5_3963.2.pwm
- Obox6_3440.2.pwm
- Og2x_3719.1.pwm
- Otp_3496.1.pwm
- Otx1_2325.1.pwm
- Otx2_3441.1.pwm
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- MsaHighlightingSchemeGaps.h
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- MsaHighlightingSchemeNoColors.h
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- CreateSubalignmentTask.cpp
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- U2Range.h
- U2RawData.h
- U2Region.cpp
- U2Region.h
- U2Sequence.h
- U2Type.cpp
- U2Type.h
- U2TypeIds.h
- U2Variant.cpp
- U2Variant.h
- UdrRecord.cpp
- UdrRecord.h
- UdrSchema.cpp
- UdrSchema.h
- UdrSchemaRegistry.cpp
- UdrSchemaRegistry.h
- Vector3D.cpp
- Vector3D.h
- DbiConnection.cpp
- DbiConnection.h
- DbiDocumentFormat.cpp
- DbiDocumentFormat.h
- U2AbstractDbi.h
- U2AssemblyDbi.h
- U2AssemblyDbiUtils.cpp
- U2AssemblyDbiUtils.h
- U2AttributeDbi.h
- U2CrossDatabaseReferenceDbi.h
- U2Dbi.cpp
- U2Dbi.h
- U2DbiPackUtils.cpp
- U2DbiPackUtils.h
- U2DbiRegistry.cpp
- U2DbiRegistry.h
- U2DbiUtils.cpp
- U2DbiUtils.h
- U2FeatureDbi.h
- U2FormatCheckResult.h
- U2ModDbi.h
- U2MsaDbi.h
- U2ObjectDbi.cpp
- U2ObjectDbi.h
- U2ObjectRelationsDbi.cpp
- U2ObjectRelationsDbi.h
- U2SequenceDbi.h
- U2SqlHelpers.cpp
- U2SqlHelpers.h
- U2SQLiteTripleStore.cpp
- U2SQLiteTripleStore.h
- U2VariantDbi.h
- UdrDbi.cpp
- UdrDbi.h
- AppContext.cpp
- AppContext.h
- AppFileStorage.cpp
- AppFileStorage.h
- AppGlobalObject.cpp
- AppGlobalObject.h
- AppResources.cpp
- AppResources.h
- AppSettings.h
- AutoAnnotationsSupport.cpp
- AutoAnnotationsSupport.h
- BaseDocumentFormats.cpp
- BaseDocumentFormats.h
- BundleInfo.cpp
- BundleInfo.h
- ClipboardController.cpp
- ClipboardController.h
- Counter.cpp
- Counter.h
- CredentialsAsker.cpp
- CredentialsAsker.h
- CustomExternalTool.cpp
- CustomExternalTool.h
- DataBaseRegistry.cpp
- DataBaseRegistry.h
- DataPathRegistry.cpp
- DataPathRegistry.h
- DBXRefRegistry.cpp
- DBXRefRegistry.h
- disable-warnings.h
- ExternalToolRegistry.cpp
- ExternalToolRegistry.h
- FormatSettings.cpp
- FormatSettings.h
- global.h
- GUrl.cpp
- GUrl.h
- Identifiable.h
- IdRegistry.h
- L10n.h
- Log.cpp
- Log.h
- LogCache.cpp
- LogCache.h
- NetworkConfiguration.cpp
- NetworkConfiguration.h
- Nullable.h
- PasswordStorage.cpp
- PasswordStorage.h
- PluginModel.cpp
- PluginModel.h
- ProjectFilterTaskRegistry.cpp
- ProjectFilterTaskRegistry.h
- ProjectService.cpp
- ProjectService.h
- ProjectTreeControllerModeSettings.cpp
- ProjectTreeControllerModeSettings.h
- ResourceTracker.cpp
- ResourceTracker.h
- ScriptEngine.h
- ScriptingToolRegistry.cpp
- ScriptingToolRegistry.h
- ServiceModel.cpp
- ServiceModel.h
- ServiceTypes.h
- Settings.h
- Task.cpp
- Task.h
- Timer.cpp
- Timer.h
- U2OpStatus.h
- U2SafePoints.cpp
- U2SafePoints.h
- UserActionsWriter.cpp
- UserActionsWriter.h
- UserApplicationsSettings.cpp
- UserApplicationsSettings.h
- Version.cpp
- Version.h
- AnnotationTableObject.cpp
- AnnotationTableObject.h
- AssemblyObject.cpp
- AssemblyObject.h
- BioStruct3DObject.cpp
- BioStruct3DObject.h
- ChromatogramObject.cpp
- ChromatogramObject.h
- DNASequenceObject.cpp
- DNASequenceObject.h
- GObjectRelationRoles.cpp
- GObjectRelationRoles.h
- GObjectTypes.cpp
- GObjectTypes.h
- GObjectUtils.cpp
- GObjectUtils.h
- MsaObject.cpp
- MsaObject.h
- PFMatrixObject.cpp
- PFMatrixObject.h
- PhyTreeObject.cpp
- PhyTreeObject.h
- PWMatrixObject.cpp
- PWMatrixObject.h
- TextObject.cpp
- TextObject.h
- UnloadedObject.cpp
- UnloadedObject.h
- VariantTrackObject.cpp
- VariantTrackObject.h
- HttpFileAdapter.cpp
- HttpFileAdapter.h
- InputStream.h
- IOAdapter.cpp
- IOAdapter.h
- IOAdapterTextStream.cpp
- IOAdapterTextStream.h
- LocalFileAdapter.cpp
- LocalFileAdapter.h
- OutputStream.h
- RingBuffer.h
- StringAdapter.cpp
- StringAdapter.h
- VFSAdapter.cpp
- VFSAdapter.h
- VirtualFileSystem.cpp
- VirtualFileSystem.h
- ZlibAdapter.cpp
- ZlibAdapter.h
- BunchMimeData.cpp
- BunchMimeData.h
- DocumentImport.cpp
- DocumentImport.h
- DocumentModel.cpp
- DocumentModel.h
- DocumentUtils.cpp
- DocumentUtils.h
- Folder.cpp
- Folder.h
- GHints.cpp
- GHints.h
- GObject.cpp
- GObject.h
- GObjectReference.cpp
- GObjectReference.h
- MimeDataIterator.cpp
- MimeDataIterator.h
- ProjectModel.cpp
- ProjectModel.h
- StateLockableDataModel.cpp
- StateLockableDataModel.h
- AnnotationSelection.cpp
- AnnotationSelection.h
- DNASequenceSelection.h
- DocumentSelection.cpp
- DocumentSelection.h
- FolderSelection.cpp
- FolderSelection.h
- GObjectSelection.cpp
- GObjectSelection.h
- LRegionsSelection.cpp
- LRegionsSelection.h
- SelectionModel.cpp
- SelectionModel.h
- SelectionTypes.cpp
- SelectionTypes.h
- SelectionUtils.cpp
- SelectionUtils.h
- TextSelection.h
- ImportDirToDatabaseTask.cpp
- ImportDirToDatabaseTask.h
- ImportDocumentToDatabaseTask.cpp
- ImportDocumentToDatabaseTask.h
- ImportFileToDatabaseTask.cpp
- ImportFileToDatabaseTask.h
- ImportObjectToDatabaseTask.cpp
- ImportObjectToDatabaseTask.h
- ImportToDatabaseTask.cpp
- ImportToDatabaseTask.h
- AbstractProjectFilterTask.cpp
- AbstractProjectFilterTask.h
- AddObjectsToDocumentTask.cpp
- AddObjectsToDocumentTask.h
- AddSequencesToAlignmentTask.cpp
- AddSequencesToAlignmentTask.h
- BackgroundTaskRunner.cpp
- BackgroundTaskRunner.h
- CleanupFileStorageTask.cpp
- CleanupFileStorageTask.h
- CloneObjectTask.cpp
- CloneObjectTask.h
- CmdlineInOutTaskRunner.cpp
- CmdlineInOutTaskRunner.h
- CmdlineTaskRunner.cpp
- CmdlineTaskRunner.h
- ConsoleShutdownTask.cpp
- ConsoleShutdownTask.h
- CopyDataTask.cpp
- CopyDataTask.h
- CopyDocumentTask.cpp
- CopyDocumentTask.h
- CopyFileTask.cpp
- CopyFileTask.h
- CreateAnnotationTask.cpp
- CreateAnnotationTask.h
- DeleteObjectsTask.cpp
- DeleteObjectsTask.h
- DocumentProviderTask.cpp
- DocumentProviderTask.h
- ExportSequencesTask.cpp
- ExportSequencesTask.h
- ExternalToolRunTask.cpp
- ExternalToolRunTask.h
- ExtractAnnotatedRegionTask.cpp
- ExtractAnnotatedRegionTask.h
- FailTask.h
- LoadDocumentTask.cpp
- LoadDocumentTask.h
- LoadRemoteDocumentTask.cpp
- LoadRemoteDocumentTask.h
- MultiTask.cpp
- MultiTask.h
- RemoveAnnotationsTask.cpp
- RemoveAnnotationsTask.h
- ReverseSequenceTask.cpp
- ReverseSequenceTask.h
- SaveDocumentStreamingTask.cpp
- SaveDocumentStreamingTask.h
- SaveDocumentTask.cpp
- SaveDocumentTask.h
- ScriptTask.cpp
- ScriptTask.h
- SequenceDbiWalkerTask.cpp
- SequenceDbiWalkerTask.h
- SequenceWalkerTask.cpp
- SequenceWalkerTask.h
- TaskSignalMapper.cpp
- TaskSignalMapper.h
- TaskStarter.cpp
- TaskStarter.h
- TLSTask.cpp
- TLSTask.h
- TmpDirChecker.cpp
- TmpDirChecker.h
- AnnotationCreationPattern.cpp
- AnnotationCreationPattern.h
- AssemblyImporter.cpp
- AssemblyImporter.h
- ChromatogramUtils.cpp
- ChromatogramUtils.h
- CollectionUtils.h
- DatatypeSerializeUtils.cpp
- DatatypeSerializeUtils.h
- FileAndDirectoryUtils.cpp
- FileAndDirectoryUtils.h
- FileFilters.cpp
- FileFilters.h
- FilesIterator.cpp
- FilesIterator.h
- FileStorageUtils.cpp
- FileStorageUtils.h
- Formatters.cpp
- Formatters.h
- FormatUtils.cpp
- FormatUtils.h
- GAutoDeleteList.cpp
- GAutoDeleteList.h
- GenbankFeatures.cpp
- GenbankFeatures.h
- GUrlUtils.cpp
- GUrlUtils.h
- ImportToDatabaseOptions.cpp
- ImportToDatabaseOptions.h
- IOAdapterUtils.cpp
- IOAdapterUtils.h
- MaIterator.cpp
- MaIterator.h
- MaModificationInfo.cpp
- MaModificationInfo.h
- MsaDbiUtils.cpp
- MsaDbiUtils.h
- MsaExportUtils.cpp
- MsaExportUtils.h
- MsaImportUtils.cpp
- MsaImportUtils.h
- MsaRowUtils.cpp
- MsaRowUtils.h
- MsaUtils.cpp
- MsaUtils.h
- MsaWalker.cpp
- MsaWalker.h
- PMatrixSerializeUtils.h
- QObjectScopedPointer.h
- QVariantUtils.cpp
- QVariantUtils.h
- SequenceUtils.cpp
- SequenceUtils.h
- SnpeffDictionary.cpp
- SnpeffDictionary.h
- StrPackUtils.cpp
- StrPackUtils.h
- SyncHttp.cpp
- SyncHttp.h
- TaskWatchdog.cpp
- TaskWatchdog.h
- TextUtils.cpp
- TextUtils.h
- U1AnnotationUtils.cpp
- U1AnnotationUtils.h
- U2AlphabetUtils.cpp
- U2AlphabetUtils.h
- U2AssemblyReadIterator.cpp
- U2AssemblyReadIterator.h
- U2AssemblyUtils.cpp
- U2AssemblyUtils.h
- U2AttributeUtils.cpp
- U2AttributeUtils.h
- U2Bits.cpp
- U2Bits.h
- U2DbiUpgrader.cpp
- U2DbiUpgrader.h
- U2FeatureUtils.cpp
- U2FeatureUtils.h
- U2ObjectTypeUtils.cpp
- U2ObjectTypeUtils.h
- U2OpStatusUtils.h
- U2SequenceUtils.cpp
- U2SequenceUtils.h
- U2VariationUtils.cpp
- U2VariationUtils.h
- VariationPropertiesUtils.h
- russian.ts
- turkish.ts
- CMakeLists.txt
- Dashboard.html
- background-menu-button.png
- background-menu.png
- background.png
- blue_circle.png
- down.png
- load_schema.png
- outside.png
- up.png
- background-menu-button.png
- background-menu.png
- background.png
- blue_circle.png
- down.png
- load_schema.png
- outside.png
- up.png
- add_directory.png
- add_file.png
- copy.png
- database_folder.png
- directory.png
- exit.png
- hard_disk.png
- logo.png
- Dashboard.cpp
- Dashboard.h
- DashboardInfo.cpp
- DashboardInfo.h
- DashboardInfoRegistry.cpp
- DashboardInfoRegistry.h
- DashboardTabPage.cpp
- DashboardTabPage.h
- DashboardWidget.cpp
- DashboardWidget.h
- DomUtils.cpp
- DomUtils.h
- ExternalToolsDashboardWidget.cpp
- ExternalToolsDashboardWidget.h
- NotificationsDashboardWidget.cpp
- NotificationsDashboardWidget.h
- OutputFilesDashboardWidget.cpp
- OutputFilesDashboardWidget.h
- ParametersDashboardWidget.cpp
- ParametersDashboardWidget.h
- RemoveDashboardsTask.cpp
- RemoveDashboardsTask.h
- ScanDashboardsDirTask.cpp
- ScanDashboardsDirTask.h
- StatisticsDashboardWidget.cpp
- StatisticsDashboardWidget.h
- StatusDashboardWidget.cpp
- StatusDashboardWidget.h
- OutputDirectoryWidget.cpp
- OutputDirectoryWidget.h
- URLLineEdit.cpp
- URLLineEdit.h
- BowtieWidgetController.cpp
- BowtieWidgetController.h
- ElementSelectorController.cpp
- ElementSelectorController.h
- PairedDatasetsController.cpp
- PairedDatasetsController.h
- PropertyWizardController.cpp
- PropertyWizardController.h
- RadioController.cpp
- RadioController.h
- SelectorActors.cpp
- SelectorActors.h
- SettingsController.cpp
- SettingsController.h
- TophatSamplesWidgetController.cpp
- TophatSamplesWidgetController.h
- UrlAndDatasetWizardController.cpp
- UrlAndDatasetWizardController.h
- WDWizardPage.cpp
- WDWizardPage.h
- WidgetController.cpp
- WidgetController.h
- WizardController.cpp
- WizardController.h
- WizardPageController.cpp
- WizardPageController.h
- AnnsActionDialog.ui
- BreakpointHitCountDialog.cpp
- BreakpointHitCountDialog.h
- BreakpointHitCountDialog.ui
- CreateDirectoryDialog.ui
- DatasetsController.cpp
- DatasetsController.h
- DatasetsListWidget.cpp
- DatasetsListWidget.h
- DatasetWidget.cpp
- DatasetWidget.h
- DatasetWidget.ui
- DbFolderItem.cpp
- DbFolderItem.h
- DbFolderOptions.ui
- DbObjectItem.cpp
- DbObjectItem.h
- DelegateEditors.cpp
- DelegateEditors.h
- DesignerUtils.cpp
- DesignerUtils.h
- DirectoryItem.cpp
- DirectoryItem.h
- DirectoryOptions.ui
- EditBreakpointLabelsDialog.cpp
- EditBreakpointLabelsDialog.h
- EditBreakpointLabelsDialog.ui
- EditFloatMarkerWidget.ui
- EditIntegerMarkerWidget.ui
- EditMarkerDialog.ui
- EditMarkerGroupDialog.cpp
- EditMarkerGroupDialog.h
- EditMarkerGroupDialog.ui
- EditStringMarkerWidget.ui
- EstimationReporter.cpp
- EstimationReporter.h
- FileItem.cpp
- FileItem.h
- GrouperEditor.cpp
- GrouperEditor.h
- GrouperEditorWidget.cpp
- GrouperEditorWidget.h
- GrouperEditorWidget.ui
- MarkerEditor.cpp
- MarkerEditor.h
- MarkerEditorWidget.cpp
- MarkerEditorWidget.h
- MarkerEditorWidget.ui
- MsaActionDialog.ui
- NewBreakpointDialog.cpp
- NewBreakpointDialog.h
- NewBreakpointDialog.ui
- NewGrouperSlotDialog.cpp
- NewGrouperSlotDialog.h
- NewGrouperSlotDialog.ui
- OutputFileDialog.cpp
- OutputFileDialog.h
- OutputFileDialog.ui
- PrompterBase.cpp
- PrompterBase.h
- PropertyWidget.cpp
- PropertyWidget.h
- QDScheduler.cpp
- QDScheduler.h
- SequenceActionDialog.ui
- StringActionDialog.ui
- UrlItem.cpp
- UrlItem.h
- WorkflowGUIUtils.cpp
- WorkflowGUIUtils.h
- russian.ts
- turkish.ts
- CMakeLists.txt
- U2Designer.qrc
- MMDBStdResidueDict
- AceFormat.cpp
- AceFormat.h
- AceImporter.cpp
- AceImporter.h
- AceImportUtils.cpp
- AceImportUtils.h
- CloneAssemblyWithReferenceToDbiTask.cpp
- CloneAssemblyWithReferenceToDbiTask.h
- ConvertAceToSqliteTask.cpp
- ConvertAceToSqliteTask.h
- AprFormat.cpp
- AprFormat.h
- AprImporter.cpp
- AprImporter.h
- MultiTableAssemblyAdapter.cpp
- MultiTableAssemblyAdapter.h
- SingleTableAssemblyAdapter.cpp
- SingleTableAssemblyAdapter.h
- SqliteUpgrader.cpp
- SqliteUpgrader.h
- SqliteUpgrader_v13.cpp
- SqliteUpgrader_v13.h
- SqliteUpgrader_v25.cpp
- SqliteUpgrader_v25.h
- SqliteUpgrader_v50.cpp
- SqliteUpgrader_v50.h
- SQLiteAssemblyDbi.cpp
- SQLiteAssemblyDbi.h
- SQLiteAttributeDbi.cpp
- SQLiteAttributeDbi.h
- SQLiteBlobInputStream.cpp
- SQLiteBlobInputStream.h
- SQLiteBlobOutputStream.cpp
- SQLiteBlobOutputStream.h
- SQLiteDbi.cpp
- SQLiteDbi.h
- SQLiteFeatureDbi.cpp
- SQLiteFeatureDbi.h
- SQLiteModDbi.cpp
- SQLiteModDbi.h
- SQLiteMsaDbi.cpp
- SQLiteMsaDbi.h
- SQLiteObjectDbi.cpp
- SQLiteObjectDbi.h
- SQLiteObjectRelationsDbi.cpp
- SQLiteObjectRelationsDbi.h
- SQLiteSequenceDbi.cpp
- SQLiteSequenceDbi.h
- SQLiteUdrDbi.cpp
- SQLiteUdrDbi.h
- SQLiteVariantDbi.cpp
- SQLiteVariantDbi.h
- BgzipTask.cpp
- BgzipTask.h
- CalculateSequencesNumberTask.cpp
- CalculateSequencesNumberTask.h
- ConvertAssemblyToSamTask.cpp
- ConvertAssemblyToSamTask.h
- ConvertFileTask.cpp
- ConvertFileTask.h
- ConvertSnpeffVariationsToAnnotationsTask.cpp
- ConvertSnpeffVariationsToAnnotationsTask.h
- ExportTasks.cpp
- ExportTasks.h
- MergeBamTask.cpp
- MergeBamTask.h
- AssemblyAdapter.h
- AssemblyPackAlgorithm.cpp
- AssemblyPackAlgorithm.h
- PairedFastqComparator.cpp
- PairedFastqComparator.h
- SnpeffInfoParser.cpp
- SnpeffInfoParser.h
- TabulatedFormatReader.cpp
- TabulatedFormatReader.h
- ABIFormat.cpp
- ABIFormat.h
- AbstractVariationFormat.cpp
- AbstractVariationFormat.h
- ASNFormat.cpp
- ASNFormat.h
- BAMUtils.cpp
- BAMUtils.h
- BedFormat.cpp
- BedFormat.h
- ClustalWAlnFormat.cpp
- ClustalWAlnFormat.h
- ColumnDataParser.cpp
- ColumnDataParser.h
- Database.cpp
- Database.h
- DifferentialFormat.cpp
- DifferentialFormat.h
- DNAQualityIOUtils.cpp
- DNAQualityIOUtils.h
- DocumentFormatUtils.cpp
- DocumentFormatUtils.h
- EMBLGenbankAbstractDocument.cpp
- EMBLGenbankAbstractDocument.h
- EMBLPlainTextFormat.cpp
- EMBLPlainTextFormat.h
- FastaFormat.cpp
- FastaFormat.h
- FastqFormat.cpp
- FastqFormat.h
- FpkmTrackingFormat.cpp
- FpkmTrackingFormat.h
- GenbankLocationParser.cpp
- GenbankLocationParser.h
- GenbankPlainTextFormat.cpp
- GenbankPlainTextFormat.h
- GFFFormat.cpp
- GFFFormat.h
- GTFFormat.cpp
- GTFFormat.h
- IOLibUtils.h
- KrakenResultsPlainTextFormat.cpp
- KrakenResultsPlainTextFormat.h
- MegaFormat.cpp
- MegaFormat.h
- MSFFormat.cpp
- MSFFormat.h
- NewickFormat.cpp
- NewickFormat.h
- NEXUSFormat.cpp
- NEXUSFormat.h
- NEXUSParser.h
- PDBFormat.cpp
- PDBFormat.h
- PDWFormat.cpp
- PDWFormat.h
- PhylipFormat.cpp
- PhylipFormat.h
- PlainTextFormat.cpp
- PlainTextFormat.h
- RawDNASequenceFormat.cpp
- RawDNASequenceFormat.h
- SAMFormat.cpp
- SAMFormat.h
- SCFFormat.cpp
- SCFFormat.h
- SimpleSNPVariationFormat.cpp
- SimpleSNPVariationFormat.h
- SNPDatabaseUtils.cpp
- SNPDatabaseUtils.h
- StdResidueDictionary.cpp
- StdResidueDictionary.h
- StockholmFormat.cpp
- StockholmFormat.h
- StreamSequenceReader.cpp
- StreamSequenceReader.h
- StreamSequenceWriter.cpp
- StreamSequenceWriter.h
- SwissProtPlainTextFormat.cpp
- SwissProtPlainTextFormat.h
- TextDocumentFormat.cpp
- TextDocumentFormat.h
- VCF4VariationFormat.cpp
- VCF4VariationFormat.h
- VectorNtiSequenceFormat.cpp
- VectorNtiSequenceFormat.h
- russian.ts
- turkish.ts
- CMakeLists.txt
- U2Formats.qrc
- add_column.png
- add_sequence.png
- add_tree.png
- align.png
- align_tree_labels.png
- amb_backward.png
- amb_forward.png
- arrow-move-left.png
- arrow-move-right.png
- arrow_down.png
- arrow_right.png
- arrow_rotate_clockwise.png
- biostruct3d.png
- cam2.png
- circular_seq.png
- close_small.png
- codon_table.png
- collapse.png
- collapse_tree.png
- collapse_update.png
- consensus.png
- copy.png
- copy_annotation_sequence.png
- copy_annotation_translation.png
- copy_complement_annotation_sequence.png
- copy_complement_annotation_translation.png
- copy_complement_sequence.png
- copy_complement_translation.png
- copy_qualifier.png
- copy_sequence.png
- copy_translation.png
- create_annotation_icon.png
- database_copy.png
- database_with_arrow.png
- details_view.png
- dna.png
- edit.png
- expand_tree.png
- extract_assembly_region.png
- find_dialog.png
- font.png
- font_default.png
- gear.svg
- goto.png
- graphs.png
- hide_all_views.png
- highlight.png
- inbox-minus.png
- load_selected_documents.png
- lock_scales.png
- mismatch-backward.png
- mismatch-forward.png
- msa_save.png
- msa_save_as.png
- msaed_remove_all_gaps.png
- msaed_remove_columns_with_gaps.png
- multiline_view.png
- navi_right.png
- notch.png
- overview.png
- paste.png
- phylip.png
- predefined_annotation_groups.png
- printer.png
- progress.gif
- refresh.png
- remove_column.png
- reroot.png
- ro_biostruct3d.png
- ro_dna.png
- ro_tree.png
- ruler_coverage.png
- sam.png
- select_region.png
- set_reference.png
- settings2.png
- show_all_views.png
- show_compl.png
- show_trans.png
- ssp_logo.png
- sum.png
- sw.png
- swap.png
- sync-msa-off.png
- sync-msa-on.png
- sync_lock.png
- sync_scales.png
- text_ab.png
- tree.png
- tree_layout.png
- tt_switch.png
- unload_document.png
- wrap_sequence.png
- zoom_fit.png
- zoom_in_tree.png
- zoom_out_tree.png
- zoom_view.png
- add_column.png
- add_sequence.png
- add_tree.png
- align.png
- align_tree_labels.png
- amb_backward.png
- amb_forward.png
- arrow-move-left.png
- arrow-move-right.png
- arrow_down.png
- arrow_right.png
- arrow_rotate_clockwise.png
- biostruct3d.png
- cam2.png
- circular_seq.png
- close_small.png
- codon_table.png
- collapse.png
- collapse_tree.png
- collapse_update.png
- consensus.png
- copy.png
- copy_annotation_sequence.png
- copy_annotation_translation.png
- copy_complement_annotation_sequence.png
- copy_complement_annotation_translation.png
- copy_complement_sequence.png
- copy_complement_translation.png
- copy_qualifier.png
- copy_sequence.png
- copy_translation.png
- create_annotation_icon.png
- database_copy.png
- database_with_arrow.png
- details_view.png
- dna.png
- edit.png
- expand_tree.png
- extract_assembly_region.png
- find_dialog.png
- font.png
- font_default.png
- gear.svg
- goto.png
- graphs.png
- hide_all_views.png
- highlight.png
- inbox-minus.png
- load_selected_documents.png
- lock_scales.png
- mismatch-backward.png
- mismatch-forward.png
- msa_save.png
- msa_save_as.png
- msaed_remove_all_gaps.png
- msaed_remove_columns_with_gaps.png
- multiline_view.png
- navi_right.png
- notch.png
- overview.png
- paste.png
- phylip.png
- predefined_annotation_groups.png
- printer.png
- progress.gif
- refresh.png
- remove_column.png
- reroot.png
- ro_biostruct3d.png
- ro_dna.png
- ro_tree.png
- ruler_coverage.png
- sam.png
- select_region.png
- set_reference.png
- settings2.png
- show_all_views.png
- show_compl.png
- show_trans.png
- ssp_logo.png
- sum.png
- sw.png
- swap.png
- sync-msa-off.png
- sync-msa-on.png
- sync_lock.png
- sync_scales.png
- text_ab.png
- tree.png
- tree_layout.png
- tt_switch.png
- unload_document.png
- wrap_sequence.png
- zoom_fit.png
- zoom_in_tree.png
- zoom_out_tree.png
- zoom_view.png
- add_existing_document.png
- add_gobject.png
- add_new_document.png
- add_to_alignment.png
- adv_widget_menu.png
- annotation_settings.png
- arrow-move-down.png
- arrow-move-up.png
- bookmark.png
- bookmark_add.png
- bookmark_edit.png
- bookmark_inactive.png
- bookmark_item.png
- bookmark_remove.png
- chart_bar.png
- close.png
- close_2.png
- color_wheel.png
- create_annotation.png
- database_copy.png
- dna_helix.png
- do_complement.png
- document.png
- error_notification.png
- external_link.png
- gobject.png
- group_auto.png
- group_green_active.png
- info_notification.png
- lock.png
- lock_open.png
- minus.png
- msa.png
- msa_show_overview.png
- pairwise.png
- plus.png
- pushpin.png
- pushpin_fixed.png
- realign_some_sequences.png
- redo.png
- remove_selected_documents.png
- ro_document.png
- ro_gobject.png
- ro_msa.png
- ro_texto.png
- ruler.png
- texto.png
- tooltip.png
- undo.png
- warning_notification.png
- zoom_in.png
- zoom_out.png
- zoom_reg.png
- zoom_sel.png
- zoom_whole.png
- GroupHeaderImageWidget.cpp
- GroupHeaderImageWidget.h
- GroupOptionsWidget.cpp
- GroupOptionsWidget.h
- OptionsPanel.cpp
- OptionsPanel.h
- OptionsPanelGroup.cpp
- OptionsPanelGroup.h
- OptionsPanelWidget.cpp
- OptionsPanelWidget.h
- OPWidgetFactory.cpp
- OPWidgetFactory.h
- OPWidgetFactoryRegistry.cpp
- OPWidgetFactoryRegistry.h
- PrimerLineEdit.cpp
- PrimerLineEdit.h
- ShowHideSubgroupWidget.cpp
- ShowHideSubgroupWidget.h
- ImageExportTask.cpp
- ImageExportTask.h
- WidgetScreenshotExportTask.cpp
- WidgetScreenshotExportTask.h
- AceImportWidget.cpp
- AceImportWidget.h
- AceImportWidget.ui
- AprImportWidget.cpp
- AprImportWidget.h
- AprImportWidget.ui
- ImportWidget.cpp
- ImportWidget.h
- LogView.cpp
- LogView.h
- FeatureKeyFilterTask.cpp
- FeatureKeyFilterTask.h
- MaContentFilterTask.cpp
- MaContentFilterTask.h
- MaSeqNameFilterTask.cpp
- MaSeqNameFilterTask.h
- ObjectNameFilterTask.cpp
- ObjectNameFilterTask.h
- SequenceAccFilterTask.cpp
- SequenceAccFilterTask.h
- TextContentFilterTask.cpp
- TextContentFilterTask.h
- ConnectionHelper.cpp
- ConnectionHelper.h
- DocumentFolders.cpp
- DocumentFolders.h
- EditableTreeView.cpp
- EditableTreeView.h
- FilteredProjectGroup.cpp
- FilteredProjectGroup.h
- FilteredProjectItemDelegate.cpp
- FilteredProjectItemDelegate.h
- LoadDocumentTaskProvider.h
- ProjectFilteringController.cpp
- ProjectFilteringController.h
- ProjectFilterNames.cpp
- ProjectFilterNames.h
- ProjectFilterProxyModel.cpp
- ProjectFilterProxyModel.h
- ProjectTreeController.cpp
- ProjectTreeController.h
- ProjectUtils.cpp
- ProjectUtils.h
- ProjectViewFilterModel.cpp
- ProjectViewFilterModel.h
- ProjectViewModel.cpp
- ProjectViewModel.h
- CommonImportOptionsDialog.cpp
- CommonImportOptionsDialog.h
- CommonImportOptionsDialog.ui
- EditConnectionDialog.cpp
- EditConnectionDialog.h
- EditConnectionDialog.ui
- ImportOptionsWidget.cpp
- ImportOptionsWidget.h
- ImportOptionsWidget.ui
- ImportToDatabaseDialog.cpp
- ImportToDatabaseDialog.h
- ImportToDatabaseDialog.ui
- ItemToImportEditDialog.cpp
- ItemToImportEditDialog.h
- ItemToImportEditDialog.ui
- AddNewDocumentDialog.ui
- AddNewDocumentDialogController.h
- AddNewDocumentDialogImpl.cpp
- AddNewDocumentDialogImpl.h
- AuthenticationDialog.cpp
- AuthenticationDialog.h
- AuthenticationDialog.ui
- AuthenticationWidget.cpp
- AuthenticationWidget.h
- AuthenticationWidget.ui
- BreakpointConditionEditDialog.cpp
- BreakpointConditionEditDialog.h
- BreakpointConditionEditDialog.ui
- CreateAnnotationDialog.cpp
- CreateAnnotationDialog.h
- CreateAnnotationDialog.ui
- CreateAnnotationFullWidget.cpp
- CreateAnnotationFullWidget.h
- CreateAnnotationFullWidget.ui
- CreateAnnotationNormalWidget.cpp
- CreateAnnotationNormalWidget.h
- CreateAnnotationNormalWidget.ui
- CreateAnnotationOptionsPanelWidget.cpp
- CreateAnnotationOptionsPanelWidget.h
- CreateAnnotationOptionsPanelWidget.ui
- CreateAnnotationWidget.cpp
- CreateAnnotationWidget.h
- CreateAnnotationWidgetController.cpp
- CreateAnnotationWidgetController.h
- CreateDocumentFromTextDialog.ui
- CreateDocumentFromTextDialogController.cpp
- CreateDocumentFromTextDialogController.h
- CreateObjectRelationDialog.ui
- CreateObjectRelationDialogController.cpp
- CreateObjectRelationDialogController.h
- CreateSequenceFromTextAndOpenViewTask.cpp
- CreateSequenceFromTextAndOpenViewTask.h
- CredentialsAskerGui.cpp
- CredentialsAskerGui.h
- DialogUtils.cpp
- DialogUtils.h
- DocumentFormatComboboxController.cpp
- DocumentFormatComboboxController.h
- DownloadRemoteFileDialog.cpp
- DownloadRemoteFileDialog.h
- DownloadRemoteFileDialog.ui
- EditQualifierDialog.cpp
- EditQualifierDialog.h
- EditQualifierDialog.ui
- EditSequenceDialog.ui
- EditSequenceDialogController.cpp
- EditSequenceDialogController.h
- EditSettingsDialog.cpp
- EditSettingsDialog.h
- EditSettingsDialog.ui
- ExportAnnotations2CSVTask.cpp
- ExportAnnotations2CSVTask.h
- ExportAnnotationsDialog.cpp
- ExportAnnotationsDialog.h
- ExportAnnotationsDialog.ui
- ExportDocumentDialog.ui
- ExportDocumentDialogController.cpp
- ExportDocumentDialogController.h
- ExportImageDialog.cpp
- ExportImageDialog.h
- ExportImageDialog.ui
- ExportObjectUtils.cpp
- ExportObjectUtils.h
- GenbankLocationValidator.cpp
- GenbankLocationValidator.h
- GlassView.cpp
- GlassView.h
- GObjectComboBoxController.cpp
- GObjectComboBoxController.h
- GraphUtils.cpp
- GraphUtils.h
- GroupedComboBoxDelegate.cpp
- GroupedComboBoxDelegate.h
- GScrollBar.cpp
- GScrollBar.h
- GUIUtils.cpp
- GUIUtils.h
- HelpButton.cpp
- HelpButton.h
- HoverQLabel.cpp
- HoverQLabel.h
- ImportSequenceFromRawDataTask.cpp
- ImportSequenceFromRawDataTask.h
- ImportWidgetsFactories.cpp
- ImportWidgetsFactories.h
- InputWidgetsControllers.cpp
- InputWidgetsControllers.h
- LabelClickTransmitter.cpp
- LabelClickTransmitter.h
- LastUsedDirHelper.cpp
- LastUsedDirHelper.h
- LocalToolbar.cpp
- LocalToolbar.h
- MultiClickMenu.cpp
- MultiClickMenu.h
- MultipartDocFormatConfiguratorWidget.ui
- ObjectViewTreeController.cpp
- ObjectViewTreeController.h
- OrderedToolbar.cpp
- OrderedToolbar.h
- PositionSelector.cpp
- PositionSelector.h
- ProjectDocumentComboBoxController.cpp
- ProjectDocumentComboBoxController.h
- ProjectTreeItemSelectorDialog.cpp
- ProjectTreeItemSelectorDialog.h
- ProjectTreeItemSelectorDialogBase.ui
- ProjectTreeItemSelectorDialogImpl.h
- RangeSelectionDialog.ui
- RangeSelector.cpp
- RangeSelector.h
- RegionSelector.cpp
- RegionSelector.h
- RegionSelectorController.cpp
- RegionSelectorController.h
- RemovePartFromSequenceDialog.ui
- RemovePartFromSequenceDialogController.cpp
- RemovePartFromSequenceDialogController.h
- SaveDocumentController.cpp
- SaveDocumentController.h
- ScaleBar.cpp
- ScaleBar.h
- ScriptEditorDelegate.cpp
- ScriptEditorDelegate.h
- ScriptEditorDialog.cpp
- ScriptEditorDialog.h
- ScriptEditorDialog.ui
- ScriptEditorWidget.cpp
- ScriptEditorWidget.h
- ScriptHighlighter.cpp
- ScriptHighlighter.h
- SearchBox.cpp
- SearchBox.h
- SearchGenbankSequenceDialog.ui
- SearchGenbankSequenceDialogController.cpp
- SearchGenbankSequenceDialogController.h
- SelectionModificationHelper.cpp
- SelectionModificationHelper.h
- SeqPasterWidget.ui
- SeqPasterWidgetController.cpp
- SeqPasterWidgetController.h
- SequenceTextEdit.cpp
- SequenceTextEdit.h
- SuggestCompleter.cpp
- SuggestCompleter.h
- Theme.h
- TreeWidgetUtils.cpp
- TreeWidgetUtils.h
- U2FileDialog.cpp
- U2FileDialog.h
- U2FileDialogPolicy.cpp
- U2FileDialogPolicy.h
- U2LongLongValidator.cpp
- U2LongLongValidator.h
- WidgetWithLocalToolbar.cpp
- WidgetWithLocalToolbar.h
- AddDocumentTask.cpp
- AddDocumentTask.h
- AppSettingsGUI.h
- ComboBoxWithCheckBoxes.cpp
- ComboBoxWithCheckBoxes.h
- MainWindow.cpp
- MainWindow.h
- ModifySequenceObjectTask.cpp
- ModifySequenceObjectTask.h
- Notification.cpp
- Notification.h
- NotificationsTypes.h
- NotificationWidget.cpp
- NotificationWidget.h
- ObjectViewModel.cpp
- ObjectViewModel.h
- ObjectViewTasks.cpp
- ObjectViewTasks.h
- OpenViewTask.cpp
- OpenViewTask.h
- PasteController.cpp
- PasteController.h
- PluginViewer.h
- ProjectParsing.cpp
- ProjectParsing.h
- ProjectView.h
- ReloadDocumentsTask.cpp
- ReloadDocumentsTask.h
- RemoveDocumentTask.cpp
- RemoveDocumentTask.h
- SaveMultipleDocumentTask.cpp
- SaveMultipleDocumentTask.h
- ToolsMenu.cpp
- ToolsMenu.h
- U2SavableWidget.cpp
- U2SavableWidget.h
- U2WidgetStateStorage.cpp
- U2WidgetStateStorage.h
- UnloadDocumentTask.cpp
- UnloadDocumentTask.h
- WelcomePageAction.cpp
- WelcomePageAction.h
- russian.ts
- turkish.ts
- CMakeLists.txt
- U2Gui.qrc
- error.png
- error_20px.png
- warning.png
- warning_20px.png
- ActorContext.cpp
- ActorContext.h
- DbiClassPrototype.cpp
- DbiClassPrototype.h
- ScriptEngineUtils.cpp
- ScriptEngineUtils.h
- ScriptLibrary.cpp
- ScriptLibrary.h
- SequencePrototype.cpp
- SequencePrototype.h
- BaseActorCategories.cpp
- BaseActorCategories.h
- BaseAttributes.cpp
- BaseAttributes.h
- BaseDatasetWorker.cpp
- BaseDatasetWorker.h
- BaseOneOneWorker.cpp
- BaseOneOneWorker.h
- BasePorts.cpp
- BasePorts.h
- BaseSlots.cpp
- BaseSlots.h
- BaseThroughWorker.cpp
- BaseThroughWorker.h
- BaseTypes.cpp
- BaseTypes.h
- LastReadyScheduler.cpp
- LastReadyScheduler.h
- LocalDomain.cpp
- LocalDomain.h
- ActorPrototypeRegistry.cpp
- ActorPrototypeRegistry.h
- Attribute.cpp
- Attribute.h
- AttributeRelation.cpp
- AttributeRelation.h
- Configuration.cpp
- Configuration.h
- CMakeLists.txt
- U2Lang.qrc
- .clang-format
- .gitignore
- CMakeLists.txt
- LICENSE.3rd_party.txt
- LICENSE.txt
- README.md
// repository documentation
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