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elastix-napari
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A napari plugin for itk-elastix
Download README (.md)
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elastix-napari
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# elastix-napari [](https://github.com/SuperElastix/elastix-napari/raw/main/LICENSE) [](https://pypi.org/project/elastix-napari) [](https://python.org) [](https://github.com/SuperElastix/elastix-napari/actions) [](https://codecov.io/gh/SuperElastix/elastix-napari) [](https://www.youtube.com/watch?v=GzbP-qUR034) The [napari] plugin for [elastix], a toolbox for rigid and nonrigid registration of images, based on [itk-elastix]. For a demo video see [youtube] channel. For tutorials on how to use elastix, see our [Jupyter notebooks]. To find parameters that work well with specific datasets, see the [elastix Model Zoo]. <img width="1438" alt="Screenshot 2021-05-12 at 15 07 24" src="https://user-images.githubusercontent.com/33719474/117980045-d6009b00-b333-11eb-9976-f64d34f4f7cc.png"> ## Installation You can install `elastix-napari` via [pip]: pip install elastix-napari ## Contributing Contributions are very welcome. Tests can be run with [tox], please ensure the coverage at least stays the same before you submit a pull request. ## License Distributed under the terms of the [Apache Software License 2.0] license, "elastix-napari" is free and open source software ## Issues If you encounter any problems, please [file an issue] along with a detailed description. [napari]: https://github.com/napari/napari [Cookiecutter]: https://github.com/audreyr/cookiecutter [@napari]: https://github.com/napari [Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0 [cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin [file an issue]: https://github.com/SuperElastix/elastix-napari/issues [tox]: https://tox.readthedocs.io/en/latest/ [pip]: https://pypi.org/project/pip/ [PyPI]: https://pypi.org/ [elastix]: https://elastix.lumc.nl/ [itk-elastix]: https://github.com/InsightSoftwareConsortium/ITKElastix [elastix Model Zoo]: https://elastix.lumc.nl/modelzoo/ [Jupyter notebooks]: https://mybinder.org/v2/gh/InsightSoftwareConsortium/ITKElastix/master?urlpath=lab/tree/examples%2FITK_Example01_SimpleRegistration.ipynb [youtube]: https://www.youtube.com/watch?v=GzbP-qUR034
