HCA_Heart

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This is the official repository for the Human Cell Atlas Heart project.

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// repository documentation

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# HCA Adult Heart Project

This is the working repository for the processing and analysis of the HCA Heart data in collaboration with:

**Teichmann Lab** - Wellcome Sanger Institute - Cambridge, United Kingdom.<br/>
**Hubner Lab** - MDC - Berlin, Germany.<br/>
**Noseda Lab** - Imperial College London - London, United Kingdom.<br/>
**Seidman Labs** - Harvard Medical School - Boston, MA, United States.<br/>

The repository will host constributions from developers and analysts at Sanger as well as the collaborators in London, Berlin and Boston.

To have a working copy of the repository, just clone it on your working machine as follow:

```
git clone --recursive https://github.com/cartal/HCA_Heart.git
```

## Repo structure

There are three main folders where files for the analysis have been stored:

1. **Archived**: Which includes the scripts to run cellbender, as well as the notebooks for downsteam analyses - **This was not used for the final analysis**.
2. **Analysis**: Contain the notebooks used in the analysis of the paper.
3. **Mapping**: Contains the scripts for the mapping of the reads to reference GRCh38 using `CellRanger-v3.0.2`.

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