PaintSHOP_resources

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PaintSHOP_resources

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A collection of downloadable resources accompanying the PaintSHOP application.

PaintSHOP_resources 최신버젼 다운로드

최종 버전 다운로드 (.zip)

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# PaintSHOP_resources

[![DOI](https://raw.githubusercontent.com/beliveau-lab/PaintSHOP_resources/master/docs/img/preprint.svg)](https://doi.org/10.1101/2020.07.05.188797)

A collection of downloadable resources accompanying the PaintSHOP application.

## FISH Probe Sets

<div align="center">
    <table>
        <thead>
            <tr>
                <th align="center">Assembly</th>
                <th align="center">DNA FISH probes</th>
                <th align="center">RNA FISH probes<br>(isoform-resolved)</th>
                <th align="center">RNA FISH probes<br>(isoform-flattened)</th>
            </tr>
        </thead>
        <tbody>
            <tr>
                <td align="left">hg38 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/hg38_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/hg38_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/hg38_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">hg19 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/hg19_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/hg19_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/hg19_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">chm13 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/chm13_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/chm13_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/chm13_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">mm39 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/mm39_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/mm39_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/mm39_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">mm10 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/mm10_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/mm10_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/mm10_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">mm9 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/mm9_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/mm9_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/mm9_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">dm6 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/dm6_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/dm6_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/dm6_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">ce11 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/ce11_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/ce11_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/ce11_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">danRer11 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/danRer11_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/danRer11_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/danRer11_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">TAIR10 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/TAIR10_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/TAIR10_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/TAIR10_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">sacCer3 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/sacCer3_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/sacCer3_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/sacCer3_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">rn6 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/rn6_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/rn6_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/rn6_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">galGal5 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/galGal5_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/galGal5_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/galGal5_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">galGal6 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/galGal6_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/galGal6_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/galGal6_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">rheMac10 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/rheMac10_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/rheMac10_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/rheMac10_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">xenTro10 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/xenTro10_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/xenTro10_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/xenTro10_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">Nfu_20140520 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/Nfu_20140520_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/Nfu_20140520_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/Nfu_20140520_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">AaegL5.0 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/AaegL5.0_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/AaegL5.0_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/AaegL5.0_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">susScr11 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/susScr11_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/susScr11_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/susScr11_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">ASM694v2 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/ASM694v2_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/ASM694v2_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/ASM694v2_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">sScyCan1.1 newBalance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/sScyCan1.1_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/sScyCan1.1_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/sScyCan1.1_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">OligoMiner hg38 balance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/hg38b_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/hg38b_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/hg38b_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">OligoMiner hg19 balance</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/hg19b_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/hg19b_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/hg19b_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">2012 oligopaints hg19</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/hg19_2012_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/hg19_2012_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/hg19_2012_iso_newBalance.zip">download</a></td>
            </tr>
            <tr>
                <td align="left">iFISH4U 40-mer hg19</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/all/iFISH4U_all_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/refseq/iFISH4U_refseq_newBalance.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/iso/iFISH4U_iso_newBalance.zip">download</a></td>
            </tr>
        </tbody>
    </table>
</div>

## Appending Sequence Files

<div align="center">
    <table>
        <thead>
            <tr>
                <th align="center">Appending Sequences</th>
                <th align="center">Compressed .tsv</th>
                <th align="center">Plaintext</th>
            </tr>
        </thead>
        <tbody>
            <tr>
                <td align="left">Kishi et al. 2019 Bridges</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/Kishi2019_bridges.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/Kishi2019_bridges.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">Mateo et al. 2019 Bridges</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/Mateo2019_bridges.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/Mateo2019_bridges.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">Xia et al. 2019 Bridges</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/Xia2019_bridges.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/Xia2019_bridges.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">MERFISH Bridges</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/merfish_bridges.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/merfish_bridges.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">MERFISH Primers</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/merfish_primers.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/merfish_primers.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">Appending Nomenclature</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/nomenclature.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/nomenclature.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">PaintSHOP Bridges</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/ps_bridges.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/ps_bridges.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">PaintSHOP Inner Forward Primers</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/ps_if.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/ps_if.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">PaintSHOP Inner Reverse Primers</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/ps_ir.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/ps_ir.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">PaintSHOP Outer Forward Primers</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/ps_of.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/ps_of.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">PaintSHOP Outer Reverse Primers</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/ps_or.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/ps_or.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">SABER 1X Sequences</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/saber_1x.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/saber_1x.txt">link</a></td>
            </tr>
            <tr>
                <td align="left">SABER 2X Sequences</td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending/saber_2x.zip">download</a></td>
                <td align="center"><a href="https://paintshop-bucket.s3.amazonaws.com/v1.2/resources/appending_plaintext/saber_2x.txt">link</a></td>
            </tr>
        </tbody>
    </table>
</div>

PaintSHOP_resources

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