fakhraei_tcbb2014

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fakhraei_tcbb2014

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Data and code of the experiments for "Network-Based Drug-Target Interaction Prediction with Probabilistic Soft Logic"

fakhraei_tcbb2014 최신버젼 다운로드

최종 버전 다운로드 (.zip)

// repository documentation

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These files contain implementation of experimental evaluation in the following paper:
  
  @article{fakharei2014network,  
  title={Network-Based Drug-Target Interaction Prediction with Probabilistic Soft Logic},  
  author={Fakhraei, Shobeir and Huang, Bert and Raschid, Louiqa and Getoor, Lise},  
  journal={IEEE/ACM Transactions on Computational Biology and Bioinformatics},  
  year={2014},  
  }  
  
To run the files you need to install Probabilistic Soft Logic (PSL) prerequisites first. Please read the instructions here for details:
https://github.com/linqs/psl/wiki

You can then run the first experiment using 'run.sh'. Please change that file to run the other experiments.

PSL models are located here: /src/main/java/edu/umd/cs/psl/fakhraei_tcbb2014

Perlman's method is implemented in matlab and is located here: /src/main/matlab/Perlmans_method

The full dataset in .mat format is located here: /src/main/matlab/Perlmans_method/data

A copy of the paper can be found here:
https://shobeir.github.io/papers/fakhraei_tcbb_2014.pdf

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