Healthcare-Informatics

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Healthcare-Informatics

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Its contain a ready radiology stack to use as home made lab

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# Installation Guide

Complete step-by-step installation instructions for the Medical Integration Stack.

## Prerequisites

### System Requirements

**Minimum:**
- CPU: 4 cores
- RAM: 8GB
- Storage: 20GB free space
- OS: Linux, macOS, Windows 10/11 with WSL2

**Recommended:**
- CPU: 8+ cores
- RAM: 16GB+
- Storage: 50GB+ SSD
- OS: Ubuntu 22.04 LTS

### Required Software

1. **Docker Engine** (20.10+)
2. **Docker Compose** (2.0+)

---

## Installation Steps

### Step 1: Install Docker

#### Ubuntu/Debian
```bash
# Update package index
sudo apt update

# Install prerequisites
sudo apt install -y apt-transport-https ca-certificates curl software-properties-common

# Add Docker's official GPG key
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo gpg --dearmor -o /usr/share/keyrings/docker-archive-keyring.gpg

# Add Docker repository
echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/docker-archive-keyring.gpg] https://download.docker.com/linux/ubuntu $(lsb_release -cs) stable" | sudo tee /etc/apt/sources.list.d/docker.list > /dev/null

# Install Docker
sudo apt update
sudo apt install -y docker-ce docker-ce-cli containerd.io docker-compose-plugin

# Add user to docker group
sudo usermod -aG docker $USER
newgrp docker

# Verify installation
docker --version
docker compose version
```

#### Windows
1. Download [Docker Desktop for Windows](https://docs.docker.com/desktop/install/windows-install/)
2. Install with WSL2 backend
3. Start Docker Desktop
4. Verify: Open PowerShell and run `docker --version`

#### macOS
```bash
# Install using Homebrew
brew install --cask docker

# Or download from:
# https://docs.docker.com/desktop/install/mac-install/

# Start Docker Desktop
# Verify
docker --version
```

---

### Step 2: Clone Repository

```bash
# Clone the repository
git clone https://github.com/yourusername/medical-integration-stack.git
cd medical-integration-stack

# Verify files
ls -la
```

You should see:
```
docker-compose.yml
orthanc-config/
ohif-config/
hl7-generator/
README.md
```

---

### Step 3: Create Required Directories

```bash
# Create config directories
mkdir -p mysql-config
mkdir -p dicom-data/input dicom-data/output
mkdir -p worklist

# Set permissions
chmod -R 777 dicom-data worklist
```

---

### Step 4: Configure MySQL

Create `mysql-config/my.cnf`:

```bash
cat > mysql-config/my.cnf << 'EOF'
[mysqld]
log-bin-trust-function-creators=1
max_connections=200
innodb_buffer_pool_size=1G
EOF
```

---

### Step 5: Start Services

```bash
# Pull all images (first time only)
docker-compose pull

# Start all services
docker-compose up -d

# Watch startup logs
docker-compose logs -f
```

**Wait 2-3 minutes for initialization.**

---

### Step 6: Verify Services

```bash
# Check all containers are running
docker-compose ps

# Should show all services as "Up" or "healthy"
```

Expected output:
```
NAME                STATUS              PORTS
openemr             Up (healthy)        0.0.0.0:80->80/tcp
openemr-mysql       Up (healthy)        0.0.0.0:3306->3306/tcp
orthanc-pacs        Up (healthy)        0.0.0.0:4242->4242/tcp, 0.0.0.0:8042->8042/tcp
orthanc-postgres    Up (healthy)        0.0.0.0:5432->5432/tcp
mirth-connect       Up (healthy)        0.0.0.0:6661->6661/tcp, 0.0.0.0:8080->8080/tcp
ohif-viewer         Up (healthy)        0.0.0.0:3000->80/tcp
hl7-generator       Up                  
phpmyadmin          Up                  0.0.0.0:8081->80/tcp
pgadmin             Up                  0.0.0.0:5050->80/tcp
```

-
| Application | URL | Credentials |
|-------------|-----|-------------|
| OpenEMR | http://localhost | admin / pass |
| Orthanc | http://localhost:8042 | orthanc / orthanc |
| OHIF Viewer | http://localhost:3000 | - |
| Mirth Connect | http://localhost:8080 | admin / admin |
| phpMyAdmin | http://localhost:8081 | root / root |
| pgAdmin | http://localhost:5050 | admin@admin.com / admin |

Healthcare-Informatics

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