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Rcwl
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Write CWL in R
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README.md
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Rcwl
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# Rcwl The Rcwl package can be a simple and user-friendly way to manage command line tools and build data analysis pipelines in R using Common Workflow Language (CWL). ## Installation The package can be installed from Bioconductor (>= 3.9): ``` r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Rcwl") # Or from github BiocManager::install("rworkflow/Rcwl") ``` ## Hello world! ``` r library(Rcwl) inputs <- InputParamList( InputParam(id = "sth") ) echo <- cwlProcess(baseCommand = "echo", inputs) echo$sth <- "Hello World!" res <- runCWL(echo) ``` ## User Guide ``` r vignette(package = "Rcwl") ```
