DecodingCancer

KO | EN

gitlite — search

#javascript #python #ai #golang #go #machine-learning #rust #docker #macos #cli #vue #awesome-list #mcp #open-source

(★ 16)

No description available.

DecodingCancer Latest Version Download

Download Latest Version (.zip)

// repository documentation

Was this content helpful?

★ 0 (0 ratings)

# 
Code base for [**Decoding pan-cancer treatment outcomes using multimodal real-world data and explainable AI**](https://www.nature.com/articles/s43018-024-00891-1)

Install requirements can be found in requirements.txt.

---

To start the the analysis, run the Main file

```
python Main.py
```

Data will prepared in data.py and loaded. Here, this is a artificial dataset in which the outcome depends on a single variable.

The *crossvalidate* function will split data into five folds and start

- the neural network training on the pan cancer data, 
- the neural network training on the single entity cancer data
- LRP computation based on the trained model from the pan cancer training

Two new folders (*results* and *LRP*) are generated and contain the training and LRP results, respectively.

To change settings with respect to model architecture or training regimen, see settings_tt.py. By default, code is run on the gpu, this can be changed using the device variable in settings.

---

We are always looking for passionate people to join our research team. If you're interested in the analysis of  molecular, clinical, or imaging data to support multimodal treatment guidance in cancer, contact us at our sites in Munich, Berlin, or Essen.

DecodingCancer

DecodingCancer Latest Version Download

Today's picks

Was this content helpful?

Recent Feedback

DecodingCancer

DecodingCancer Latest Version Download

Today's picks

Was this content helpful?

Recent Feedback

Download README