R-scripts-graphing-statistics

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R-scripts-graphing-statistics

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My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq

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# R_plots

This is my R scripts archive for publication-ready analysis and plotting including:

1. PCA
2. Area plot
3. Dotplot <br>
![alt text](https://github.com/raymondkiu/R_scripts/blob/master/graphs/dotplot.png)
4. Heatmap
5. Bar plots for 16S metagenomics
6. World map
7. Rarefraction curve for diversity analysis <br>
![alt text](https://github.com/raymondkiu/R_scripts/blob/master/graphs/rarecurve.png)

8. Volcano plot (RNAseq)
![alt text](https://github.com/raymondkiu/R_scripts/blob/master/graphs/diffexpr-volcanoplot.png)

9. MA plot (RNAseq)
![alt text](https://github.com/raymondkiu/R_scripts/blob/master/graphs/Diffexpr-maplot.png)

10. Column plot using Geom_bar <br>
![alt text](https://github.com/raymondkiu/R_scripts/blob/master/graphs/Col-MF3.png)

11. Faceted bar plot
![alt text](https://github.com/raymondkiu/R_scripts/blob/master/graphs/bar-key-genes.png)

R scripts for program:
1. Hierbaps: phylogenetic clustering method
2. Diversity index: Inverse Simpson, Fisher Alpha and Shannon-Weaver
3. Sleuth (RNAseq)
4. DESeq 2

R-scripts-graphing-statistics

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