STAR

(★ 2,236)

RNA-seq aligner

파일 탐색기

최종 버전 다운로드 (.zip)

- - STAR
  - STARlong
- - STAR
  - STARlong
- - STAR
  - STARlong
- STARmanual.pdf
- STARconsensus.md
- STARsolo.md
- - convertParDefToLatexTable.awk
  - parametersDefault.tex
  - STARmanual.tex
- - Dockerfile
- - ENCODE.txt
- - calcInsertCoverage.awk
  - extractSJfromGTF.sh
  - filterCirc.awk
  - mergeGeneCounts.awk
  - mergeLogFinal.awk
  - mergeSuperContig.awk
  - sjBED12.awk
  - sjCollapseSamples.awk
  - sjFromSAMcollapseUandM.awk
  - sjFromSAMcollapseUandM_inclOverlaps.awk
  - sjMotif.m
  - soloBasicCellFilter.awk
  - soloCompareMtx.awk
  - soloCountMatrixFromBAM.awk
  - soloExtractFiltCells.awk
  - soloUMIperCell.awk
  - tagXSstrandedData.awk
  - transcriptTypes.awk
  - transfragsFromBedGraph.awk
- - .gitignore
  - .travis.yml
  - bgzf.c
  - bgzip.c
  - config.h
  - faidx.5
  - faidx.c
  - hfile.c
  - hfile_internal.h
  - hfile_net.c
  - hts.c
  - htslib.mk
  - htslib_vars.mk
  - kfunc.c
  - knetfile.c
  - kstring.c
  - Makefile
  - README.md
  - sam.5
  - sam.c
  - synced_bcf_reader.c
  - tabix.1
  - tabix.c
  - tbx.c
  - vcf.5
  - vcf.c
  - vcf_sweep.c
  - vcfutils.c
- - LICENSE
  - opal.cpp
  - opal.h
  - simde_avx2.h
- - ReadMe.txt
  - sgt.h
- AlignVsTranscript.h
- bam_cat.c
- bam_cat.h
- BAMbinSortByCoordinate.cpp
- BAMbinSortByCoordinate.h
- BAMbinSortUnmapped.cpp
- BAMbinSortUnmapped.h
- BAMfunctions.cpp
- BAMfunctions.h
- BAMoutput.cpp
- BAMoutput.h
- bamRemoveDuplicates.cpp
- bamRemoveDuplicates.h
- bamSortByCoordinate.cpp
- bamSortByCoordinate.h
- binarySearch2.cpp
- binarySearch2.h
- blocksOverlap.cpp
- blocksOverlap.h
- Chain.cpp
- Chain.h
- ChimericAlign.cpp
- ChimericAlign.h
- ChimericAlign_chimericBAMoutput.cpp
- ChimericAlign_chimericJunctionOutput.cpp
- ChimericAlign_chimericStitching.cpp
- ChimericDetection.cpp
- ChimericDetection.h
- ChimericDetection_chimericDetectionMult.cpp
- ChimericSegment.cpp
- ChimericSegment.h
- ChimericTranscript.h
- ClipCR4.cpp
- ClipCR4.h
- ClipMate.h
- ClipMate_clip.cpp
- ClipMate_clipChunk.cpp
- ClipMate_initialize.cpp
- ErrorWarning.cpp
- ErrorWarning.h
- extendAlign.cpp
- extendAlign.h
- funCompareUintAndSuffixes.cpp
- funCompareUintAndSuffixes.h
- funCompareUintAndSuffixesMemcmp.cpp
- funCompareUintAndSuffixesMemcmp.h
- funPrimaryAlignMark.cpp
- funPrimaryAlignMark.h
- Genome.cpp
- Genome.h
- Genome_genomeGenerate.cpp
- Genome_genomeLoad.cpp
- Genome_genomeOutLoad.cpp
- Genome_insertSequences.cpp
- Genome_transformGenome.cpp
- genomeGenerate.h
- genomeParametersWrite.cpp
- genomeParametersWrite.h
- genomeSAindex.cpp
- genomeSAindex.h
- genomeScanFastaFiles.cpp
- genomeScanFastaFiles.h
- GlobalVariables.cpp
- GlobalVariables.h
- GTF.cpp
- GTF.h
- GTF_superTranscript.cpp
- GTF_transcriptGeneSJ.cpp
- IncludeDefine.h
- InOutStreams.cpp
- InOutStreams.h
- insertSeqSA.cpp
- insertSeqSA.h
- Makefile
- mapThreadsSpawn.cpp
- mapThreadsSpawn.h
- outputSJ.cpp
- outputSJ.h
- OutSJ.cpp
- OutSJ.h
- PackedArray.cpp
- PackedArray.h
- ParameterInfo.h
- Parameters.cpp
- Parameters.h
- Parameters_closeReadsFiles.cpp
- Parameters_openReadsFiles.cpp
- Parameters_readFilesInit.cpp
- Parameters_readSAMheader.cpp
- Parameters_samAttributes.cpp
- ParametersChimeric.h
- ParametersChimeric_initialize.cpp
- ParametersClip.h
- ParametersClip_initialize.cpp
- parametersDefault
- ParametersGenome.cpp
- ParametersGenome.h
- ParametersSolo.cpp
- ParametersSolo.h
- Quantifications.cpp
- Quantifications.h
- ReadAlign.cpp
- ReadAlign.h
- ReadAlign_alignBAM.cpp
- ReadAlign_assignAlignToWindow.cpp
- ReadAlign_calcCIGAR.cpp
- ReadAlign_chimericDetection.cpp
- ReadAlign_chimericDetectionOld.cpp
- ReadAlign_chimericDetectionOldOutput.cpp
- ReadAlign_chimericDetectionPEmerged.cpp
- ReadAlign_CIGAR.cpp
- ReadAlign_createExtendWindowsWithAlign.cpp
- ReadAlign_mapOneRead.cpp
- ReadAlign_mapOneReadSpliceGraph.cpp
- ReadAlign_mappedFilter.cpp
- ReadAlign_maxMappableLength2strands.cpp
- ReadAlign_multMapSelect.cpp
- ReadAlign_oneRead.cpp
- ReadAlign_outputAlignments.cpp
- ReadAlign_outputSpliceGraphSAM.cpp
- ReadAlign_outputTranscriptCIGARp.cpp
- ReadAlign_outputTranscriptSAM.cpp
- ReadAlign_outputTranscriptSJ.cpp
- ReadAlign_outputVariation.cpp
- ReadAlign_peOverlapMergeMap.cpp
- ReadAlign_quantTranscriptome.cpp
- ReadAlign_stitchPieces.cpp
- ReadAlign_stitchWindowSeeds.cpp
- ReadAlign_storeAligns.cpp
- ReadAlign_transformGenome.cpp
- ReadAlign_waspMap.cpp
- ReadAlignChunk.cpp
- ReadAlignChunk.h
- ReadAlignChunk_mapChunk.cpp
- ReadAlignChunk_processChunks.cpp
- ReadAnnotations.h
- readBarcodeLoad.h
- readLoad.cpp
- readLoad.h
- samHeaders.cpp
- samHeaders.h
- SequenceFuns.cpp
- SequenceFuns.h
- serviceFuns.cpp
- SharedMemory.cpp
- SharedMemory.h
- signalFromBAM.cpp
- signalFromBAM.h
- sjAlignSplit.cpp
- sjAlignSplit.h
- sjdbBuildIndex.cpp
- sjdbBuildIndex.h
- SjdbClass.h
- sjdbInsertJunctions.cpp
- sjdbInsertJunctions.h
- sjdbLoadFromFiles.cpp
- sjdbLoadFromFiles.h
- sjdbLoadFromStream.cpp
- sjdbLoadFromStream.h
- sjdbPrepare.cpp
- sjdbPrepare.h
- Solo.cpp
- Solo.h
- SoloBarcode.cpp
- SoloBarcode.h
- SoloBarcode_extractBarcode.cpp
- SoloCommon.h
- SoloFeature.cpp
- SoloFeature.h
- SoloFeature_addBAMtags.cpp
- SoloFeature_cellFiltering.cpp
- SoloFeature_collapseUMI_Graph.cpp
- SoloFeature_collapseUMIall.cpp
- SoloFeature_countCBgeneUMI.cpp
- SoloFeature_countSmartSeq.cpp
- SoloFeature_countVelocyto.cpp
- SoloFeature_emptyDrops_CR.cpp
- SoloFeature_loadRawMatrix.cpp
- SoloFeature_outputResults.cpp
- SoloFeature_processRecords.cpp
- SoloFeature_quantTranscript.cpp
- SoloFeature_redistributeReadsByCB.cpp
- SoloFeature_statsOutput.cpp
- SoloFeature_sumThreads.cpp
- SoloFeatureTypes.h
- SoloFilteredCells.h
- soloInputFeatureUMI.cpp
- soloInputFeatureUMI.h
- SoloRead.cpp
- SoloRead.h
- SoloRead_record.cpp
- SoloReadBarcode.cpp
- SoloReadBarcode.h
- SoloReadBarcode_getCBandUMI.cpp
- SoloReadBarcodeStats.h
- SoloReadFeature.cpp
- SoloReadFeature.h
- SoloReadFeature_inputRecords.cpp
- SoloReadFeature_record.cpp
- SoloReadFeatureStats.h
- sortSuffixesBucket.h
- SpliceGraph.cpp
- SpliceGraph.h
- SpliceGraph_findSuperTr.cpp
- SpliceGraph_swScoreSpliced.cpp
- SpliceGraph_swTraceBack.cpp
- STAR.cpp
- Stats.cpp
- Stats.h
- stitchAlignToTranscript.cpp
- stitchAlignToTranscript.h
- stitchGapIndel.cpp
- stitchWindowAligns.cpp
- stitchWindowAligns.h
- streamFuns.cpp
- streamFuns.h
- stringSubstituteAll.cpp
- stringSubstituteAll.h
- SuffixArrayFuns.cpp
- SuffixArrayFuns.h
- SuperTranscriptome.cpp
- SuperTranscriptome.h
- sysRemoveDir.cpp
- sysRemoveDir.h
- systemFunctions.cpp
- systemFunctions.h
- Test.hpp
- ThreadControl.cpp
- ThreadControl.h
- TimeFunctions.cpp
- TimeFunctions.h
- Transcript.cpp
- Transcript.h
- Transcript_alignScore.cpp
- Transcript_convertGenomeCigar.cpp
- Transcript_generateCigarP.cpp
- Transcript_transformGenome.cpp
- Transcript_variationAdjust.cpp
- Transcript_variationOutput.cpp
- Transcriptome.cpp
- Transcriptome.h
- Transcriptome_alignExonOverlap.cpp
- Transcriptome_classifyAlign.cpp
- Transcriptome_geneCountsAddAlign.cpp
- Transcriptome_geneFullAlignOverlap.cpp
- Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp
- Transcriptome_quantAlign.cpp
- twoPassRunPass1.cpp
- twoPassRunPass1.h
- Variation.cpp
- Variation.h
- VERSION
.gitignore
.gitmodules
.travis.yml
_config.yml
CHANGES.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
README.md
RELEASEnotes.md

# 설치 가이드

1. 코드 내려받기

git clone https://github.com/alexdobin/STAR

깃허브에서 프로젝트 코드 전체를 내 컴퓨터로 내려받습니다.

cd STAR

방금 내려받은 프로젝트 폴더 안으로 이동합니다.

2. Docker

쉬움 추천

사전 준비물

Git GitHub에서 프로젝트 코드를 내려받으려면 필요합니다.
Docker Desktop 컨테이너를 빌드하고 실행하려면 필요합니다. 설치 후 실행해서 백그라운드에 켜두세요.

⚠️ 이 프로젝트는 규모가 큰 저장소라, 이 방법이 실제 핵심 제품이 아니라 내부 하위 패키지를 가리키는 것일 수 있습니다. README 전체를 함께 확인해보세요.

docker build -f extras/docker/Dockerfile -t star .

Dockerfile을 기반으로 실행 가능한 이미지를 빌드합니다.

docker run -p 8080:80 star

빌드된 이미지를 실제 컨테이너로 실행합니다.

✅ 터미널에 docker compose ps 를 입력해 컨테이너들이 Up 상태인지 확인하세요. README에 포트 번호가 적혀있다면 브라우저에서 http://localhost:포트번호 로 접속해보세요.

3. Make

보통

사전 준비물

Git GitHub에서 프로젝트 코드를 내려받으려면 필요합니다.
Make Linux/macOS는 보통 기본 설치되어 있습니다. Windows는 별도 설치(예: MSYS2, WSL)가 필요합니다.

make STAR