CIRI-long

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Circular RNA Identification for Nanopore Sequencing

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## CIRI-long: circular RNA identifier using long-read sequencing data
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Circular RNA Identification for Long-Reads Nanopore Sequencing Data

### Documentation

Documentation is available online at [https://ciri-cookbook.readthedocs.io/en/latest](https://ciri-cookbook.readthedocs.io/en/latest/CIRI-long_0_home.html#)

### Author

Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)

Maintainer: Jinyang Zhang

### Release Notes

- version 1.1.0: Add convert_bed.py, update pyccs dependency, fixed bugs
- version 1.0.3: Add output of circRNA isoform usage index, fixed bugs
- version 1.0.2: Add fast mode for ccs detection and option for user-provided circRNA annotation
- version 1.0.1: Fixed bug
- version 1.0: First released version

### License

The code is released under the MIT License. See the `LICENSE` file for more detail

### Citing CIRI-long

> Zhang, J., Hou, L., Zuo, Z., Ji, P., Zhang, X., Xue, Y., & Zhao, F. (2021). Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long. Nature Biotechnology. https://doi.org/10.1038/s41587-021-00842-6

CIRI-long

CIRI-long Latest Version Download

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