MONAI
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- test_integration_unet_2d.py
- test_integration_workers.py
- test_integration_workflows.py
- test_integration_workflows_adversarial.py
- test_integration_workflows_gan.py
- test_loader_semaphore.py
- test_mapping_filed.py
- test_meta_affine.py
- test_metatensor_integration.py
- test_module_list.py
- test_one_of.py
- test_pad_collation.py
- test_reg_loss_integration.py
- test_retinanet_predict_utils.py
- test_seg_loss_integration.py
- test_spatial_combine_transforms.py
- test_testtimeaugmentation.py
- test_vis_gradbased.py
- test_vista3d_utils.py
- __init__.py
- test_bending_energy.py
- test_diffusion_loss.py
- __init__.py
- test_global_mutual_information_loss.py
- test_local_normalized_cross_correlation_loss.py
- __init__.py
- test_adversarial_loss.py
- test_aucm_loss.py
- test_barlow_twins_loss.py
- test_boundary_loss.py
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- test_dice_ce_loss.py
- test_dice_focal_loss.py
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- test_ds_loss.py
- test_focal_loss.py
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- test_generalized_dice_loss.py
- test_generalized_wasserstein_dice_loss.py
- test_giou_loss.py
- test_hausdorff_loss.py
- test_masked_dice_loss.py
- test_masked_loss.py
- test_mcc_loss.py
- test_multi_scale.py
- test_nacl_loss.py
- test_perceptual_loss.py
- test_spectral_loss.py
- test_ssim_loss.py
- test_sure_loss.py
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- __init__.py
- test_absolute_volume_difference.py
- test_calibration_metric.py
- test_compute_average_precision.py
- test_compute_confusion_matrix.py
- test_compute_f_beta.py
- test_compute_fid_metric.py
- test_compute_froc.py
- test_compute_generalized_dice.py
- test_compute_meandice.py
- test_compute_meaniou.py
- test_compute_mmd_metric.py
- test_compute_multiscalessim_metric.py
- test_compute_panoptic_quality.py
- test_compute_regression_metrics.py
- test_compute_roc_auc.py
- test_compute_variance.py
- test_cumulative.py
- test_cumulative_average.py
- test_cumulative_average_dist.py
- test_embedding_collapse.py
- test_hausdorff_distance.py
- test_label_quality_score.py
- test_loss_metric.py
- test_metrics_reloaded.py
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- test_surface_dice.py
- test_surface_distance.py
- __init__.py
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- test_factorized_increase.py
- test_factorized_reduce.py
- test_p3d_block.py
- __init__.py
- test_dvf2ddf.py
- test_warp.py
- __init__.py
- test_adn.py
- test_CABlock.py
- test_convolutions.py
- test_crf_cpu.py
- test_crf_cuda.py
- test_crossattention.py
- test_denseblock.py
- test_downsample_block.py
- test_dynunet_block.py
- test_fpn_block.py
- test_hyena_block.py
- test_localnet_block.py
- test_mlp.py
- test_patchembedding.py
- test_regunet_block.py
- test_se_block.py
- test_se_blocks.py
- test_segresnet_block.py
- test_selfattention.py
- test_simple_aspp.py
- test_spatialattention.py
- test_subpixel_upsample.py
- test_text_encoding.py
- test_transformerblock.py
- test_unetr_block.py
- test_upsample_block.py
- __init__.py
- test_bilateral_approx_cpu.py
- test_bilateral_approx_cuda.py
- test_bilateral_precise.py
- test_phl_cpu.py
- test_phl_cuda.py
- test_trainable_bilateral.py
- test_trainable_joint_bilateral.py
- __init__.py
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- test_apply_filter.py
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- test_discriminator.py
- test_dynunet.py
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- test_fullyconnectednet.py
- test_generator.py
- test_globalnet.py
- test_highresnet.py
- test_hovernet.py
- test_hyena_nd_unetr.py
- test_masked_autoencoder_vit.py
- test_mednext.py
- test_milmodel.py
- test_navit.py
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- test_spade_diffusion_model_unet.py
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- test_transchex.py
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- test_replace_module.py
- test_train_mode.py
- __init__.py
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- test_convert_to_onnx.py
- test_convert_to_torchscript.py
- test_convert_to_trt.py
- test_lazy_onnx_import.py
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- __init__.py
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- test_scale_intensity_range_percentilesd.py
- __init__.py
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- test_inverse_array.py
- test_inverse_dict.py
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- __init__.py
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- __init__.py
- test_convert_box_points.py
- test_grid_patch.py
- test_grid_patchd.py
- test_rand_grid_patch.py
- test_rand_grid_patchd.py
- test_spatial_resampled.py
- __init__.py
- test_randomizable.py
- test_randomizable_transform_type.py
- __init__.py
- test_apply_transform_to_points.py
- test_apply_transform_to_pointsd.py
- test_identity.py
- test_identityd.py
- test_lambda.py
- test_lambdad.py
- test_rand_lambda.py
- test_rand_lambdad.py
- test_simulatedelay.py
- test_simulatedelayd.py
- test_splitdim.py
- test_splitdimd.py
- test_transform_points_image_to_worldd.py
- test_transform_points_world_to_imaged.py
- __init__.py
- test_correct_crop_centers.py
- test_get_unique_labels.py
- test_print_transform_backends.py
- test_soft_clip.py
- __init__.py
- test_activations.py
- test_activationsd.py
- test_adaptors.py
- test_add_coordinate_channels.py
- test_add_coordinate_channelsd.py
- test_add_extreme_points_channel.py
- test_add_extreme_points_channeld.py
- test_adjust_contrast.py
- test_adjust_contrastd.py
- test_affine.py
- test_affine_grid.py
- test_affined.py
- test_as_channel_last.py
- test_as_channel_lastd.py
- test_as_discrete.py
- test_as_discreted.py
- test_border_pad.py
- test_border_padd.py
- test_bounding_rect.py
- test_bounding_rectd.py
- test_cast_to_type.py
- test_cast_to_typed.py
- test_center_scale_crop.py
- test_center_scale_cropd.py
- test_center_spatial_crop.py
- test_center_spatial_cropd.py
- test_classes_to_indices.py
- test_classes_to_indicesd.py
- test_clip_intensity_percentiles.py
- test_clip_intensity_percentilesd.py
- test_compose_get_number_conversions.py
- test_concat_itemsd.py
- test_convert_to_multi_channel.py
- test_convert_to_multi_channeld.py
- test_copy_itemsd.py
- test_create_grid_and_affine.py
- test_create_rotate_order.py
- test_crop_foreground.py
- test_crop_foregroundd.py
- test_cucim_dict_transform.py
- test_cucim_transform.py
- test_data_stats.py
- test_data_statsd.py
- test_delete_itemsd.py
- test_detect_envelope.py
- test_distance_transform_edt.py
- test_divisible_pad.py
- test_divisible_padd.py
- test_ensure_channel_first.py
- test_ensure_channel_firstd.py
- test_ensure_type.py
- test_ensure_typed.py
- test_fg_bg_to_indices.py
- test_fg_bg_to_indicesd.py
- test_fill_holes.py
- test_fill_holesd.py
- test_flatten_sub_keysd.py
- test_flip.py
- test_flipd.py
- test_fourier.py
- test_gaussian_sharpen.py
- test_gaussian_sharpend.py
- test_gaussian_smooth.py
- test_gaussian_smoothd.py
- test_generate_heatmap.py
- test_generate_heatmapd.py
- test_generate_label_classes_crop_centers.py
- test_generate_pos_neg_label_crop_centers.py
- test_generate_spatial_bounding_box.py
- test_get_extreme_points.py
- test_gibbs_noise.py
- test_gibbs_noised.py
- test_grid_distortion.py
- test_grid_distortiond.py
- test_grid_split.py
- test_grid_splitd.py
- test_histogram_normalize.py
- test_histogram_normalized.py
- test_image_filter.py
- test_intensity_stats.py
- test_intensity_statsd.py
- test_inverse_collation.py
- test_k_space_spike_noise.py
- test_k_space_spike_noised.py
- test_keep_largest_connected_component.py
- test_keep_largest_connected_componentd.py
- test_label_filter.py
- test_label_to_contour.py
- test_label_to_contourd.py
- test_label_to_mask.py
- test_label_to_maskd.py
- test_load_image.py
- test_load_imaged.py
- test_load_spacing_orientation.py
- test_map_and_generate_sampling_centers.py
- test_map_binary_to_indices.py
- test_map_classes_to_indices.py
- test_map_label_value.py
- test_map_label_valued.py
- test_map_transform.py
- test_mask_intensity.py
- test_mask_intensityd.py
- test_mean_ensemble.py
- test_mean_ensembled.py
- test_median_smooth.py
- test_median_smoothd.py
- test_morphological_ops.py
- test_nifti_endianness.py
- test_normalize_intensity.py
- test_normalize_intensityd.py
- test_nvtx_decorator.py
- test_nvtx_transform.py
- test_orientation.py
- test_orientationd.py
- test_rand_adjust_contrast.py
- test_rand_adjust_contrastd.py
- test_rand_affine.py
- test_rand_affine_grid.py
- test_rand_affined.py
- test_rand_axis_flip.py
- test_rand_axis_flipd.py
- test_rand_bias_field.py
- test_rand_bias_fieldd.py
- test_rand_coarse_dropout.py
- test_rand_coarse_dropoutd.py
- test_rand_coarse_shuffle.py
- test_rand_coarse_shuffled.py
- test_rand_crop_by_label_classes.py
- test_rand_crop_by_label_classesd.py
- test_rand_crop_by_pos_neg_label.py
- test_rand_crop_by_pos_neg_labeld.py
- test_rand_cucim_dict_transform.py
- test_rand_cucim_transform.py
- test_rand_deform_grid.py
- test_rand_elastic_2d.py
- test_rand_elastic_3d.py
- test_rand_elasticd_2d.py
- test_rand_elasticd_3d.py
- test_rand_flip.py
- test_rand_flipd.py
- test_rand_gaussian_noise.py
- test_rand_gaussian_noised.py
- test_rand_gaussian_sharpen.py
- test_rand_gaussian_sharpend.py
- test_rand_gaussian_smooth.py
- test_rand_gaussian_smoothd.py
- test_rand_gibbs_noise.py
- test_rand_gibbs_noised.py
- test_rand_grid_distortion.py
- test_rand_grid_distortiond.py
- test_rand_histogram_shift.py
- test_rand_k_space_spike_noise.py
- test_rand_k_space_spike_noised.py
- test_rand_rician_noise.py
- test_rand_rician_noised.py
- test_rand_rotate.py
- test_rand_rotate90.py
- test_rand_rotate90d.py
- test_rand_rotated.py
- test_rand_scale_crop.py
- test_rand_scale_cropd.py
- test_rand_scale_intensity.py
- test_rand_scale_intensity_fixed_mean.py
- test_rand_scale_intensity_fixed_meand.py
- test_rand_scale_intensityd.py
- test_rand_shift_intensity.py
- test_rand_shift_intensityd.py
- test_rand_simulate_low_resolution.py
- test_rand_simulate_low_resolutiond.py
- test_rand_spatial_crop.py
- test_rand_spatial_crop_samples.py
- test_rand_spatial_crop_samplesd.py
- test_rand_spatial_cropd.py
- test_rand_std_shift_intensity.py
- test_rand_std_shift_intensityd.py
- test_rand_torchio.py
- test_rand_torchiod.py
- test_rand_zoom.py
- test_rand_zoomd.py
- test_randidentity.py
- test_random_order.py
- test_randtorchvisiond.py
- test_regularization.py
- test_remove_repeated_channel.py
- test_remove_repeated_channeld.py
- test_repeat_channel.py
- test_repeat_channeld.py
- test_resample_backends.py
- test_resample_to_match.py
- test_resample_to_matchd.py
- test_resampler.py
- test_resize.py
- test_resize_with_pad_or_crop.py
- test_resize_with_pad_or_cropd.py
- test_resized.py
- test_rotate.py
- test_rotate90.py
- test_rotate90d.py
- test_rotated.py
- test_save_classificationd.py
- test_save_image.py
- test_save_imaged.py
- test_savitzky_golay_smooth.py
- test_savitzky_golay_smoothd.py
- test_scale_intensity.py
- test_scale_intensity_fixed_mean.py
- test_scale_intensity_range.py
- test_scale_intensity_ranged.py
- test_scale_intensityd.py
- test_select_itemsd.py
- test_shift_intensity.py
- test_shift_intensityd.py
- test_signal_continuouswavelet.py
- test_signal_fillempty.py
- test_signal_fillemptyd.py
- test_signal_rand_add_gaussiannoise.py
- test_signal_rand_add_sine.py
- test_signal_rand_add_sine_partial.py
- test_signal_rand_add_squarepulse.py
- test_signal_rand_add_squarepulse_partial.py
- test_signal_rand_drop.py
- test_signal_rand_scale.py
- test_signal_rand_shift.py
- test_signal_remove_frequency.py
- test_smooth_field.py
- test_sobel_gradient.py
- test_sobel_gradientd.py
- test_spacing.py
- test_spacingd.py
- test_spatial_crop.py
- test_spatial_cropd.py
- test_spatial_gpu_support.py
- test_spatial_pad.py
- test_spatial_padd.py
- test_spatial_resample.py
- test_squeezedim.py
- test_squeezedimd.py
- test_std_shift_intensity.py
- test_std_shift_intensityd.py
- test_threshold_intensity.py
- test_threshold_intensityd.py
- test_to_contiguous.py
- test_to_cupy.py
- test_to_cupyd.py
- test_to_device.py
- test_to_deviced.py
- test_to_numpy.py
- test_to_numpyd.py
- test_to_pil.py
- test_to_pild.py
- test_to_tensor.py
- test_to_tensord.py
- test_torchio.py
- test_torchiod.py
- test_torchvision.py
- test_torchvisiond.py
- test_transform.py
- test_transpose.py
- test_transposed.py
- test_ultrasound_confidence_map_transform.py
- test_utils_pytorch_numpy_unification.py
- test_vote_ensemble.py
- test_vote_ensembled.py
- test_with_allow_missing_keys.py
- test_zoom.py
- test_zoomd.py
- __init__.py
- test_hovernet_loss.py
- test_ordering.py
- test_wsireader.py
- __init__.py
- test_ensure_tuple.py
- test_monai_env_vars.py
- test_monai_utils_misc.py
- test_str2bool.py
- test_str2list.py
- __init__.py
- test_convert_data_type.py
- test_get_equivalent_dtype.py
- test_safe_dtype_range.py
- __init__.py
- test_alias.py
- test_component_store.py
- test_deprecated.py
- test_enum_bound_interp.py
- test_evenly_divisible_all_gather_dist.py
- test_get_package_version.py
- test_handler_logfile.py
- test_handler_metric_logger.py
- test_list_to_dict.py
- test_look_up_option.py
- test_optional_import.py
- test_pad_mode.py
- test_profiling.py
- test_rankfilter_dist.py
- test_require_pkg.py
- test_safe_eval.py
- test_sample_slices.py
- test_set_determinism.py
- test_squeeze_unsqueeze.py
- test_state_cacher.py
- test_torchscript_utils.py
- test_version.py
- test_version_after.py
- __init__.py
- test_blend_images.py
- test_matshow3d.py
- __init__.py
- test_img2tensorboard.py
- test_occlusion_sensitivity.py
- test_plot_2d_or_3d_image.py
- test_vis_cam.py
- test_vis_gradcam.py
- __init__.py
- clang_format_utils.py
- croppers.py
- hvd_evenly_divisible_all_gather.py
- lazy_transforms_utils.py
- min_tests.py
- nonconfig_workflow.py
- padders.py
- runner.py
- test_call_dist.py
- test_query_memory.py
- test_timedcall_dist.py
- test_utils.py
- .clang-format
- .coderabbit.yaml
- .deepsource.toml
- .dockerignore
- .gitattributes
- .gitignore
- .pre-commit-config.yaml
- .readthedocs.yml
- CHANGELOG.md
- CITATION.cff
- CODE_OF_CONDUCT.md
- CONTRIBUTING.md
- Dockerfile
- Dockerfile.slim
- environment-dev.yml
- LICENSE
- MANIFEST.in
- pyproject.toml
- README.md
- runtests.sh
- SECURITY.md
- setup.py
- versioneer.py
# Installation Guide
1. Get the code
git clone https://github.com/Project-MONAI/MONAI
Downloads the entire project code from GitHub to your computer.
cd MONAI
Moves into the project folder you just downloaded.
2. Official Install Script
Easy RecommendedPrerequisites
- Python 3 Python is required to use pip.
pip install monai
Installs the package published on PyPI directly โ no need to clone the source.
After installing, open a new terminal and run the program's version command (e.g. --version) to confirm it worked.
Pulled directly from this repo's README.
3. Docker
EasyPrerequisites
- Git Needed to download the project code from GitHub.
- Docker Desktop Needed to build and run containers. Install it and keep it running in the background.
docker build -t monai .
Builds a runnable image based on the Dockerfile.
docker run -p 8080:80 monai
Runs the built image as an actual container.
Run docker compose ps to check the containers are Up. If the README mentions a port, open http://localhost:PORT in your browser.
4. Python
EasyPrerequisites
pip install monai
Installs the package published on PyPI directly โ no need to clone the source.
If it runs without errors and prints output in the terminal, it worked.
Pulled directly from this repo's README.
// repository documentation
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