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mindful-programming

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Computing resources for peace of mind

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# From mindful programming to reproducible research

Computing resources and practices for peace of mind.

Tutorial developed for the Nantucket workshop: [developR2019](https://github.com/NantucketDevelopeR/2019Workshop) (November 2019).

## Learning outcomes

By the end of the tutorial, you will be able to
- will be comfortable with the standard git pipeline
- will lose fear of git/GitHub conflicts
- will prioritize reproducibility and good computing practices in your research

## Syllabus

## Other resources

This website tries to highlight key practices in programming and reproducibility. I am doing a shameless copy of better and more complete tutorials like:

- Cecile Ane's class on [Computing Tools](https://github.com/cecileane/computingtools)
- Jenny Bryan's [Happy git with R](https://happygitwithr.com/)
- Karl Broman's class on [Tools for Reproducible Research](http://kbroman.org/Tools4RR/)
- UW-Madison [software carpentry](https://uw-madison-datascience.github.io/2019-06-13-uwmadison-swc/)
- Jenny Bryan's [How to name files](https://speakerdeck.com/jennybc/how-to-name-files)
- Seth Robertson's [Undoing commits in git](http://sethrobertson.github.io/GitFixUm/fixup.html)

## YouTube video of the lecture

You can find the 30-minute lecture in [this link](https://youtu.be/7KCqpL0cde8).

## Meet the instructor

Claudia Sol&iacute;s-Lemus is an assistant professor at the [Wisconsin Institute for Discovery](https://wid.wisc.edu/) and the [Department of Plant Pathology](https://plantpath.wisc.edu/) at the [University of Wisconsin-Madison](http://www.wisc.edu). Originally from Mexico City, she did her Undergraduate degrees
in Actuarial Sciences and Applied Mathematics at [ITAM](https://www.itam.mx/en).
Then, she did a MA in [Mathematics](http://www.math.wisc.edu) and a PhD in [Statistics](http://www.stat.wisc.edu) at the [University of Wisconsin-Madison](http://www.wisc.edu).

<div class="container">
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        <div class="column">
            <a href="../pics/claudiaSmall1.png">
            <img src="https://crsl4.github.io/forensic-stat//pics/claudiaSmall1.png" width="150"
                  title="Claudia Sol&iacute;s-Lemus" alt="Claudia Sol&iacute;s.Lemus"/></a>
        </div>
        <div class="column">
            Pronouns: she/her <br/>
            <a href="https://namedrop.io/claudiasolislemus">Name pronunciation</a><br/>
            <a href="https://solislemuslab.github.io/">Lab website</a><br/>
            <a href="https://scholar.google.com/citations?user=GrUypj8AAAAJ&hl=en&oi=ao">Google scholar</a><br/>
            <a href="https://github.com/crsl4">GitHub</a><br/>
            <a href="https://solislemuslab.github.io//pages/people.html">Contact Info</a><br/>
        </div>
    </div>
</div>

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