RamanSPy
RamanSPy: An open-source Python package for integrative Raman spectroscopy data analysis
파일 탐색기
최종 버전 다운로드 (.zip)- python-package.yml
- _sphinx_javascript_frameworks_compat.js
- jquery.js
- class.doctree
- index.doctree
- plot_i_package_overview.doctree
- plot_i_preprocessing_pipelines.doctree
- plot_ii_dl_denoising.doctree
- plot_iii_bacteria_classification.doctree
- sg_execution_times.doctree
- plot_i_generic_container.doctree
- plot_ii_spectrum_container.doctree
- plot_iii_image_container.doctree
- plot_iv_volume_container.doctree
- sg_execution_times.doctree
- i_witec.doctree
- ii_renishaw.doctree
- iii_ocean_insight.doctree
- iv_other.doctree
- ii_rruff.doctree
- plot_i_bacteria.doctree
- plot_ii_metrics.doctree
- sg_execution_times.doctree
- plot_i_spectra.doctree
- plot_ii_mean_spectra.doctree
- plot_ii_peaks.doctree
- plot_ii_spectra_mean.doctree
- plot_iii_image.doctree
- plot_iv_volume.doctree
- plot_v_peak_dist.doctree
- plot_vi_customisation.doctree
- sg_execution_times.doctree
- plot_i_predefined_methods.doctree
- plot_ii_custom_method.doctree
- plot_iii_custom_pipeline.doctree
- plot_iv_predefined_pipeline.doctree
- sg_execution_times.doctree
- plot_i_decomposition.doctree
- plot_ii_kmeans.doctree
- plot_iii_unmixing.doctree
- plot_iv_integrative_svm.doctree
- plot_v_integrative_nn.doctree
- sg_execution_times.doctree
- plot_i_endmembers.doctree
- sg_execution_times.doctree
- index.doctree
- README.doctree
- ramanspy.analysis.cluster.KMeans.doctree
- ramanspy.analysis.decompose.ICA.doctree
- ramanspy.analysis.decompose.NMF.doctree
- ramanspy.analysis.decompose.PCA.doctree
- ramanspy.analysis.unmix.FIPPI.doctree
- ramanspy.analysis.unmix.NFINDR.doctree
- ramanspy.analysis.unmix.PPI.doctree
- ramanspy.analysis.unmix.VCA.doctree
- ramanspy.preprocessing.baseline.AIRPLS.doctree
- ramanspy.preprocessing.baseline.ARPLS.doctree
- ramanspy.preprocessing.baseline.ASLS.doctree
- ramanspy.preprocessing.baseline.ASPLS.doctree
- ramanspy.preprocessing.baseline.CornerCutting.doctree
- ramanspy.preprocessing.baseline.DRPLS.doctree
- ramanspy.preprocessing.baseline.FABC.doctree
- ramanspy.preprocessing.baseline.Goldindec.doctree
- ramanspy.preprocessing.baseline.IARPLS.doctree
- ramanspy.preprocessing.baseline.IASLS.doctree
- ramanspy.preprocessing.baseline.IRSQR.doctree
- ramanspy.preprocessing.baseline.ModPoly.doctree
- ramanspy.preprocessing.baseline.Poly.doctree
- ramanspy.preprocessing.denoise.Gaussian.doctree
- ramanspy.preprocessing.denoise.Kernel.doctree
- ramanspy.preprocessing.denoise.SavGol.doctree
- ramanspy.preprocessing.denoise.Whittaker.doctree
- ramanspy.preprocessing.despike.WhitakerHayes.doctree
- ramanspy.preprocessing.misc.BackgroundSubtractor.doctree
- ramanspy.preprocessing.misc.Cropper.doctree
- ramanspy.preprocessing.normalise.AUC.doctree
- ramanspy.preprocessing.normalise.MaxIntensity.doctree
- ramanspy.preprocessing.normalise.MinMax.doctree
- ramanspy.preprocessing.normalise.Vector.doctree
- ramanspy.preprocessing.protocols.bergholt2016.doctree
- ramanspy.preprocessing.protocols.georgiev2023_P1.doctree
- ramanspy.preprocessing.protocols.georgiev2023_P3.doctree
- README.doctree
- README.doctree
- -README.doctree
- README.doctree
- README.doctree
- README.doctree
- README.doctree
- README.doctree
- README.doctree
- analysis.doctree
- data_classes.doctree
- datasets.doctree
- environment.pickle
- index.doctree
- installation.doctree
- loading.doctree
- metrics.doctree
- overview.doctree
- plot.doctree
- preprocessing.doctree
- synth.doctree
- viz.doctree
- plot_i_decomposition.ipynb
- auto_examples_python.zip
- plot_ii_spectra_mean.ipynb
- plot_iv_integrative_svm.ipynb
- plot_ii_kmeans.ipynb
- plot_vi_customisation.ipynb
- i_witec.py
- plot_iii_image_container.ipynb
- iv_other.ipynb
- plot_i_decomposition.py
- plot_i_endmembers.ipynb
- plot_iv_volume.py
- plot_i_bacteria.ipynb
- plot_iv_predefined_pipeline.py
- plot_iii_image.py
- iv_other.py
- plot_ii_kmeans.py
- plot_iv_volume_container.py
- plot_ii_spectrum_container.py
- plot_iii_custom_pipeline.py
- plot_i_generic_container.py
- i_witec.ipynb
- iii_ocean_insight.py
- plot_i_spectra.ipynb
- plot_ii_peaks.ipynb
- plot_i_predefined_methods.ipynb
- plot_ii_metrics.ipynb
- plot_iii_unmixing.py
- plot_ii_custom_method.py
- plot_ii_custom_method.ipynb
- ii_renishaw.ipynb
- plot_vi_customisation.py
- plot_ii_dl_denoising.py
- plot_v_peak_dist.py
- plot_ii_spectra_mean.py
- plot_iii_image_container.py
- auto_examples_jupyter.zip
- plot_i_preprocessing_pipelines.ipynb
- plot_v_integrative_nn.py
- plot_iii_unmixing.ipynb
- plot_i_endmembers.py
- plot_ii_mean_spectra.py
- plot_iv_volume.ipynb
- auto_tutorials_jupyter.zip
- plot_i_preprocessing_pipelines.py
- plot_ii_spectrum_container.ipynb
- ii_rruff.ipynb
- plot_i_package_overview.py
- plot_ii_mean_spectra.ipynb
- plot_ii_metrics.py
- ii_rruff.py
- plot_i_bacteria.py
- plot_iii_bacteria_classification.py
- plot_iii_image.ipynb
- plot_iv_volume_container.ipynb
- plot_v_integrative_nn.ipynb
- auto_tutorials_python.zip
- plot_i_generic_container.ipynb
- plot_ii_dl_denoising.ipynb
- iii_ocean_insight.ipynb
- plot_iii_bacteria_classification.ipynb
- plot_iv_integrative_svm.py
- plot_iii_custom_pipeline.ipynb
- plot_i_predefined_methods.py
- plot_i_package_overview.ipynb
- plot_ii_peaks.py
- ii_renishaw.py
- plot_i_spectra.py
- plot_iv_predefined_pipeline.ipynb
- plot_v_peak_dist.ipynb
- package_overview__.png
- sphx_glr_i_witec_thumb.png
- sphx_glr_ii_renishaw_thumb.png
- sphx_glr_ii_rruff_thumb.png
- sphx_glr_iii_ocean_insight_thumb.png
- sphx_glr_iv_other_thumb.png
- sphx_glr_plot_i_bacteria_001.png
- sphx_glr_plot_i_bacteria_thumb.png
- sphx_glr_plot_i_decomposition_001.png
- sphx_glr_plot_i_decomposition_002.png
- sphx_glr_plot_i_decomposition_003.png
- sphx_glr_plot_i_decomposition_004.png
- sphx_glr_plot_i_decomposition_005.png
- sphx_glr_plot_i_decomposition_006.png
- sphx_glr_plot_i_decomposition_007.png
- sphx_glr_plot_i_decomposition_008.png
- sphx_glr_plot_i_decomposition_009.png
- sphx_glr_plot_i_decomposition_thumb.png
- sphx_glr_plot_i_endmembers_001.png
- sphx_glr_plot_i_endmembers_thumb.png
- sphx_glr_plot_i_generic_container_001.png
- sphx_glr_plot_i_generic_container_thumb.png
- sphx_glr_plot_i_package_overview_001.png
- sphx_glr_plot_i_package_overview_002.png
- sphx_glr_plot_i_package_overview_003.png
- sphx_glr_plot_i_package_overview_004.png
- sphx_glr_plot_i_package_overview_005.png
- sphx_glr_plot_i_package_overview_006.png
- sphx_glr_plot_i_package_overview_007.png
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- sphx_glr_plot_i_package_overview_013.png
- sphx_glr_plot_i_package_overview_014.png
- sphx_glr_plot_i_package_overview_015.png
- sphx_glr_plot_i_package_overview_016.png
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- sphx_glr_plot_i_package_overview_018.png
- sphx_glr_plot_i_package_overview_019.png
- sphx_glr_plot_i_package_overview_020.png
- sphx_glr_plot_i_package_overview_021.png
- sphx_glr_plot_i_package_overview_022.png
- sphx_glr_plot_i_package_overview_023.png
- sphx_glr_plot_i_package_overview_thumb.png
- sphx_glr_plot_i_predefined_methods_001.png
- sphx_glr_plot_i_predefined_methods_002.png
- sphx_glr_plot_i_predefined_methods_003.png
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- sphx_glr_plot_i_predefined_methods_006.png
- sphx_glr_plot_i_predefined_methods_thumb.png
- sphx_glr_plot_i_preprocessing_pipelines_001.png
- sphx_glr_plot_i_preprocessing_pipelines_002.png
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- sphx_glr_plot_i_preprocessing_pipelines_007.png
- sphx_glr_plot_i_preprocessing_pipelines_008.png
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- sphx_glr_plot_i_preprocessing_pipelines_010.png
- sphx_glr_plot_i_preprocessing_pipelines_thumb.png
- sphx_glr_plot_i_spectra_001.png
- sphx_glr_plot_i_spectra_002.png
- sphx_glr_plot_i_spectra_003.png
- sphx_glr_plot_i_spectra_004.png
- sphx_glr_plot_i_spectra_005.png
- sphx_glr_plot_i_spectra_006.png
- sphx_glr_plot_i_spectra_007.png
- sphx_glr_plot_i_spectra_008.png
- sphx_glr_plot_i_spectra_009.png
- sphx_glr_plot_i_spectra_010.png
- sphx_glr_plot_i_spectra_011.png
- sphx_glr_plot_i_spectra_012.png
- sphx_glr_plot_i_spectra_013.png
- sphx_glr_plot_i_spectra_014.png
- sphx_glr_plot_i_spectra_015.png
- sphx_glr_plot_i_spectra_thumb.png
- sphx_glr_plot_ii_custom_method_001.png
- sphx_glr_plot_ii_custom_method_002.png
- sphx_glr_plot_ii_custom_method_003.png
- sphx_glr_plot_ii_custom_method_thumb.png
- sphx_glr_plot_ii_dl_denoising_001.png
- sphx_glr_plot_ii_dl_denoising_002.png
- sphx_glr_plot_ii_dl_denoising_003.png
- sphx_glr_plot_ii_dl_denoising_004.png
- sphx_glr_plot_ii_dl_denoising_005.png
- sphx_glr_plot_ii_dl_denoising_006.png
- sphx_glr_plot_ii_dl_denoising_007.png
- sphx_glr_plot_ii_dl_denoising_008.png
- sphx_glr_plot_ii_dl_denoising_thumb.png
- sphx_glr_plot_ii_kmeans_001.png
- sphx_glr_plot_ii_kmeans_002.png
- sphx_glr_plot_ii_kmeans_003.png
- sphx_glr_plot_ii_kmeans_004.png
- sphx_glr_plot_ii_kmeans_005.png
- sphx_glr_plot_ii_kmeans_006.png
- sphx_glr_plot_ii_kmeans_thumb.png
- sphx_glr_plot_ii_mean_spectra_001.png
- sphx_glr_plot_ii_mean_spectra_002.png
- sphx_glr_plot_ii_mean_spectra_003.png
- sphx_glr_plot_ii_mean_spectra_004.png
- sphx_glr_plot_ii_mean_spectra_005.png
- sphx_glr_plot_ii_mean_spectra_006.png
- sphx_glr_plot_ii_mean_spectra_007.png
- sphx_glr_plot_ii_mean_spectra_008.png
- sphx_glr_plot_ii_mean_spectra_009.png
- sphx_glr_plot_ii_metrics_001.png
- sphx_glr_plot_ii_metrics_thumb.png
- sphx_glr_plot_ii_peaks_001.png
- sphx_glr_plot_ii_peaks_thumb.png
- sphx_glr_plot_ii_spectra_mean_001.png
- sphx_glr_plot_ii_spectra_mean_002.png
- sphx_glr_plot_ii_spectra_mean_003.png
- sphx_glr_plot_ii_spectra_mean_004.png
- sphx_glr_plot_ii_spectra_mean_005.png
- sphx_glr_plot_ii_spectra_mean_006.png
- sphx_glr_plot_ii_spectra_mean_007.png
- sphx_glr_plot_ii_spectra_mean_008.png
- sphx_glr_plot_ii_spectra_mean_009.png
- sphx_glr_plot_ii_spectra_mean_thumb.png
- sphx_glr_plot_ii_spectrum_container_001.png
- sphx_glr_plot_ii_spectrum_container_thumb.png
- sphx_glr_plot_iii_bacteria_classification_001.png
- sphx_glr_plot_iii_bacteria_classification_002.png
- sphx_glr_plot_iii_bacteria_classification_003.png
- sphx_glr_plot_iii_bacteria_classification_004.png
- sphx_glr_plot_iii_bacteria_classification_thumb.png
- sphx_glr_plot_iii_custom_pipeline_001.png
- sphx_glr_plot_iii_custom_pipeline_002.png
- sphx_glr_plot_iii_custom_pipeline_003.png
- sphx_glr_plot_iii_custom_pipeline_004.png
- sphx_glr_plot_iii_custom_pipeline_005.png
- sphx_glr_plot_iii_custom_pipeline_006.png
- sphx_glr_plot_iii_custom_pipeline_thumb.png
- sphx_glr_plot_iii_image_001.png
- sphx_glr_plot_iii_image_002.png
- sphx_glr_plot_iii_image_003.png
- sphx_glr_plot_iii_image_004.png
- sphx_glr_plot_iii_image_005.png
- sphx_glr_plot_iii_image_006.png
- sphx_glr_plot_iii_image_container_001.png
- sphx_glr_plot_iii_image_container_002.png
- sphx_glr_plot_iii_image_container_003.png
- sphx_glr_plot_iii_image_container_thumb.png
- sphx_glr_plot_iii_image_thumb.png
- sphx_glr_plot_iii_unmixing_001.png
- sphx_glr_plot_iii_unmixing_002.png
- sphx_glr_plot_iii_unmixing_003.png
- sphx_glr_plot_iii_unmixing_004.png
- sphx_glr_plot_iii_unmixing_005.png
- sphx_glr_plot_iii_unmixing_006.png
- sphx_glr_plot_iii_unmixing_007.png
- sphx_glr_plot_iii_unmixing_008.png
- sphx_glr_plot_iii_unmixing_009.png
- sphx_glr_plot_iii_unmixing_thumb.png
- sphx_glr_plot_iv_integrative_svm_001.png
- sphx_glr_plot_iv_integrative_svm_thumb.png
- sphx_glr_plot_iv_predefined_pipeline_001.png
- sphx_glr_plot_iv_predefined_pipeline_002.png
- sphx_glr_plot_iv_predefined_pipeline_thumb.png
- sphx_glr_plot_iv_volume_001.png
- sphx_glr_plot_iv_volume_002.png
- sphx_glr_plot_iv_volume_003.png
- sphx_glr_plot_iv_volume_004.png
- sphx_glr_plot_iv_volume_container_001.png
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- sphx_glr_plot_iv_volume_container_thumb.png
- sphx_glr_plot_iv_volume_thumb.png
- sphx_glr_plot_v_integrative_nn_001.png
- sphx_glr_plot_v_integrative_nn_002.png
- sphx_glr_plot_v_integrative_nn_003.png
- sphx_glr_plot_v_integrative_nn_thumb.png
- sphx_glr_plot_v_peak_dist_001.png
- sphx_glr_plot_v_peak_dist_002.png
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- sphx_glr_plot_v_peak_dist_004.png
- sphx_glr_plot_v_peak_dist_005.png
- sphx_glr_plot_v_peak_dist_thumb.png
- sphx_glr_plot_vi_customisation_001.png
- sphx_glr_plot_vi_customisation_002.png
- sphx_glr_plot_vi_customisation_003.png
- sphx_glr_plot_vi_customisation_004.png
- sphx_glr_plot_vi_customisation_005.png
- sphx_glr_plot_vi_customisation_006.png
- sphx_glr_plot_vi_customisation_007.png
- sphx_glr_plot_vi_customisation_008.png
- sphx_glr_plot_vi_customisation_009.png
- sphx_glr_plot_vi_customisation_010.png
- sphx_glr_plot_vi_customisation_011.png
- sphx_glr_plot_vi_customisation_012.png
- sphx_glr_plot_vi_customisation_013.png
- sphx_glr_plot_vi_customisation_014.png
- sphx_glr_plot_vi_customisation_015.png
- sphx_glr_plot_vi_customisation_016.png
- sphx_glr_plot_vi_customisation_017.png
- sphx_glr_plot_vi_customisation_018.png
- sphx_glr_plot_vi_customisation_019.png
- sphx_glr_plot_vi_customisation_020.png
- sphx_glr_plot_vi_customisation_021.png
- sphx_glr_plot_vi_customisation_022.png
- sphx_glr_plot_vi_customisation_023.png
- sphx_glr_plot_vi_customisation_024.png
- sphx_glr_plot_vi_customisation_025.png
- sphx_glr_plot_vi_customisation_026.png
- sphx_glr_plot_vi_customisation_027.png
- sphx_glr_plot_vi_customisation_028.png
- sphx_glr_plot_vi_customisation_029.png
- sphx_glr_plot_vi_customisation_030.png
- sphx_glr_plot_vi_customisation_031.png
- sphx_glr_plot_vi_customisation_032.png
- sphx_glr_plot_vi_customisation_thumb.png
- cluster.html
- decompose.html
- unmix.html
- plot.html
- baseline.html
- denoise.html
- despike.html
- misc.html
- normalise.html
- Pipeline.html
- protocols.html
- Step.html
- mix.html
- synth.html
- core.html
- datasets.html
- load.html
- metrics.html
- index.html
- ramanspy.preprocessing.denoise.rst.txt
- class.rst.txt
- index.rst.txt
- plot_i_package_overview.rst.txt
- plot_i_preprocessing_pipelines.rst.txt
- plot_ii_dl_denoising.rst.txt
- plot_iii_bacteria_classification.rst.txt
- sg_execution_times.rst.txt
- plot_i_generic_container.rst.txt
- plot_ii_spectrum_container.rst.txt
- plot_iii_image_container.rst.txt
- plot_iv_volume_container.rst.txt
- sg_execution_times.rst.txt
- i_witec.rst.txt
- ii_renishaw.rst.txt
- iii_ocean_insight.rst.txt
- iv_other.rst.txt
- ii_rruff.rst.txt
- plot_i_bacteria.rst.txt
- plot_ii_metrics.rst.txt
- sg_execution_times.rst.txt
- plot_i_spectra.rst.txt
- plot_ii_mean_spectra.rst.txt
- plot_ii_peaks.rst.txt
- plot_ii_spectra_mean.rst.txt
- plot_iii_image.rst.txt
- plot_iv_volume.rst.txt
- plot_v_peak_dist.rst.txt
- plot_vi_customisation.rst.txt
- sg_execution_times.rst.txt
- plot_i_predefined_methods.rst.txt
- plot_ii_custom_method.rst.txt
- plot_iii_custom_pipeline.rst.txt
- plot_iv_predefined_pipeline.rst.txt
- sg_execution_times.rst.txt
- plot_i_decomposition.rst.txt
- plot_ii_kmeans.rst.txt
- plot_iii_unmixing.rst.txt
- plot_iv_integrative_svm.rst.txt
- plot_v_integrative_nn.rst.txt
- sg_execution_times.rst.txt
- plot_i_endmembers.rst.txt
- sg_execution_times.rst.txt
- index.rst.txt
- ramanspy.preprocessing.denoise.Gaussian.apply.rst.txt
- ramanspy.preprocessing.denoise.Gaussian.rst.txt
- ramanspy.preprocessing.denoise.Kernel.apply.rst.txt
- ramanspy.preprocessing.denoise.Kernel.rst.txt
- ramanspy.preprocessing.denoise.SavGol.apply.rst.txt
- ramanspy.preprocessing.denoise.SavGol.rst.txt
- ramanspy.preprocessing.denoise.Whittaker.apply.rst.txt
- ramanspy.preprocessing.denoise.Whittaker.rst.txt
- README.rst.txt
- ramanspy.analysis.cluster.KMeans.apply.rst.txt
- ramanspy.analysis.cluster.KMeans.rst.txt
- ramanspy.analysis.decompose.ICA.apply.rst.txt
- ramanspy.analysis.decompose.ICA.rst.txt
- ramanspy.analysis.decompose.NMF.apply.rst.txt
- ramanspy.analysis.decompose.NMF.rst.txt
- ramanspy.analysis.decompose.PCA.apply.rst.txt
- ramanspy.analysis.decompose.PCA.rst.txt
- ramanspy.analysis.unmix.FIPPI.apply.rst.txt
- ramanspy.analysis.unmix.FIPPI.rst.txt
- ramanspy.analysis.unmix.NFINDR.apply.rst.txt
- ramanspy.analysis.unmix.NFINDR.rst.txt
- ramanspy.analysis.unmix.PPI.apply.rst.txt
- ramanspy.analysis.unmix.PPI.rst.txt
- ramanspy.analysis.unmix.VCA.apply.rst.txt
- ramanspy.analysis.unmix.VCA.rst.txt
- ramanspy.preprocessing.denoise.Gaussian.apply.rst.txt
- ramanspy.preprocessing.denoise.Gaussian.rst.txt
- ramanspy.preprocessing.denoise.Kernel.apply.rst.txt
- ramanspy.preprocessing.denoise.Kernel.rst.txt
- ramanspy.preprocessing.denoise.SavGol.apply.rst.txt
- ramanspy.preprocessing.denoise.SavGol.rst.txt
- ramanspy.preprocessing.denoise.Whittaker.apply.rst.txt
- ramanspy.preprocessing.denoise.Whittaker.rst.txt
- ramanspy.preprocessing.baseline.AIRPLS.apply.rst.txt
- ramanspy.preprocessing.baseline.AIRPLS.rst.txt
- ramanspy.preprocessing.baseline.ARPLS.apply.rst.txt
- ramanspy.preprocessing.baseline.ARPLS.rst.txt
- ramanspy.preprocessing.baseline.ASLS.apply.rst.txt
- ramanspy.preprocessing.baseline.ASLS.rst.txt
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- sphx_glr_plot_i_decomposition_001.png
- sphx_glr_plot_i_decomposition_002.png
- sphx_glr_plot_i_decomposition_003.png
- sphx_glr_plot_i_decomposition_004.png
- sphx_glr_plot_i_decomposition_005.png
- sphx_glr_plot_i_decomposition_006.png
- sphx_glr_plot_i_decomposition_007.png
- sphx_glr_plot_i_decomposition_008.png
- sphx_glr_plot_i_decomposition_009.png
- sphx_glr_plot_ii_kmeans_001.png
- sphx_glr_plot_ii_kmeans_002.png
- sphx_glr_plot_ii_kmeans_003.png
- sphx_glr_plot_ii_kmeans_004.png
- sphx_glr_plot_ii_kmeans_005.png
- sphx_glr_plot_ii_kmeans_006.png
- sphx_glr_plot_iii_unmixing_001.png
- sphx_glr_plot_iii_unmixing_002.png
- sphx_glr_plot_iii_unmixing_003.png
- sphx_glr_plot_iii_unmixing_004.png
- sphx_glr_plot_iii_unmixing_005.png
- sphx_glr_plot_iii_unmixing_006.png
- sphx_glr_plot_iii_unmixing_007.png
- sphx_glr_plot_iii_unmixing_008.png
- sphx_glr_plot_iii_unmixing_009.png
- sphx_glr_plot_iv_integrative_svm_001.png
- sphx_glr_plot_v_integrative_nn_001.png
- sphx_glr_plot_v_integrative_nn_002.png
- sphx_glr_plot_v_integrative_nn_003.png
- plot_i_decomposition.ipynb
- plot_i_decomposition.py
- plot_i_decomposition.py.md5
- plot_i_decomposition.rst
- plot_i_decomposition_codeobj.pickle
- plot_ii_kmeans.ipynb
- plot_ii_kmeans.py
- plot_ii_kmeans.py.md5
- plot_ii_kmeans.rst
- plot_ii_kmeans_codeobj.pickle
- plot_iii_unmixing.ipynb
- plot_iii_unmixing.py
- plot_iii_unmixing.py.md5
- plot_iii_unmixing.rst
- plot_iii_unmixing_codeobj.pickle
- plot_iv_integrative_svm.ipynb
- plot_iv_integrative_svm.py
- plot_iv_integrative_svm.py.md5
- plot_iv_integrative_svm.rst
- plot_iv_integrative_svm_codeobj.pickle
- plot_v_integrative_nn.ipynb
- plot_v_integrative_nn.py
- plot_v_integrative_nn.py.md5
- plot_v_integrative_nn.rst
- plot_v_integrative_nn_codeobj.pickle
- sg_execution_times.rst
- sphx_glr_plot_i_endmembers_thumb.png
- sphx_glr_plot_i_endmembers_001.png
- plot_i_endmembers.ipynb
- plot_i_endmembers.py
- plot_i_endmembers.py.md5
- plot_i_endmembers.rst
- plot_i_endmembers_codeobj.pickle
- sg_execution_times.rst
- auto_tutorials_jupyter.zip
- auto_tutorials_python.zip
- index.rst
- 3D THP1 map 001 L5 (B+R) (Sub BG).mat
- plot_i_package_overview.py
- plot_i_preprocessing_pipelines.py
- plot_ii_dl_denoising.py
- plot_iii_bacteria_classification.py
- README.rst
- ResUNet.pt
- ramanspy.analysis.cluster.KMeans.rst
- ramanspy.analysis.decompose.ICA.rst
- ramanspy.analysis.decompose.NMF.rst
- ramanspy.analysis.decompose.PCA.rst
- ramanspy.analysis.unmix.FIPPI.rst
- ramanspy.analysis.unmix.NFINDR.rst
- ramanspy.analysis.unmix.PPI.rst
- ramanspy.analysis.unmix.VCA.rst
- ramanspy.preprocessing.baseline.AIRPLS.rst
- ramanspy.preprocessing.baseline.ARPLS.rst
- ramanspy.preprocessing.baseline.ASLS.rst
- ramanspy.preprocessing.baseline.ASPLS.rst
- ramanspy.preprocessing.baseline.CornerCutting.rst
- ramanspy.preprocessing.baseline.DRPLS.rst
- ramanspy.preprocessing.baseline.FABC.rst
- ramanspy.preprocessing.baseline.Goldindec.rst
- ramanspy.preprocessing.baseline.IARPLS.rst
- ramanspy.preprocessing.baseline.IASLS.rst
- ramanspy.preprocessing.baseline.IRSQR.rst
- ramanspy.preprocessing.baseline.ModPoly.rst
- ramanspy.preprocessing.baseline.Poly.rst
- ramanspy.preprocessing.denoise.Gaussian.rst
- ramanspy.preprocessing.denoise.Kernel.rst
- ramanspy.preprocessing.denoise.SavGol.rst
- ramanspy.preprocessing.denoise.Whittaker.rst
- ramanspy.preprocessing.despike.WhitakerHayes.rst
- ramanspy.preprocessing.misc.BackgroundSubtractor.rst
- ramanspy.preprocessing.misc.Cropper.rst
- ramanspy.preprocessing.normalise.AUC.rst
- ramanspy.preprocessing.normalise.MaxIntensity.rst
- ramanspy.preprocessing.normalise.MinMax.rst
- ramanspy.preprocessing.normalise.Vector.rst
- ramanspy.preprocessing.protocols.bergholt2016.rst
- ramanspy.preprocessing.protocols.georgiev2023_P1.rst
- ramanspy.preprocessing.protocols.georgiev2023_P3.rst
- raman_logo_transparent.png
- ramanspy_graphical_abstract.png
- my_raman_image
- plot_i_generic_container.py
- plot_ii_spectrum_container.py
- plot_iii_image_container.py
- plot_iv_volume_container.py
- README.rst
- i_witec.py
- ii_renishaw.py
- iii_ocean_insight.py
- iv_other.py
- README.rst
- ii_rruff.py
- plot_i_bacteria.py
- plot_ii_metrics.py
- README.rst
- cell_image.png
- plot_i_spectra.py
- plot_ii_peaks.py
- plot_ii_spectra_mean.py
- plot_iii_image.py
- plot_iv_volume.py
- plot_v_peak_dist.py
- plot_vi_customisation.py
- README.rst
- v.png
- plot_i_predefined_methods.py
- plot_ii_custom_method.py
- plot_iii_custom_pipeline.py
- plot_iv_predefined_pipeline.py
- README.rst
- plot_i_decomposition.py
- plot_ii_kmeans.py
- plot_iii_unmixing.py
- plot_iv_integrative_svm.py
- plot_v_integrative_nn.py
- README.rst
- plot_i_endmembers.py
- README.rst
- README.rst
- analysis.rst
- conf.py
- data_classes.rst
- datasets.rst
- index.rst
- installation.rst
- loading.rst
- metrics.rst
- overview.rst
- plot.rst
- preprocessing.rst
- synth.rst
- make.bat
- Makefile
- fig2_cell_analysis.ipynb
- fig3_preprocessing_pipelines.ipynb
- fig4_dl_denoising.ipynb
- fig5_bacteria_classification.ipynb
- __init__.py
- cluster.py
- decompose.py
- Step.py
- unmix.py
- __init__.py
- _core.py
- plot.py
- __init__.py
- baseline.py
- denoise.py
- despike.py
- misc.py
- normalise.py
- Pipeline.py
- protocols.py
- Step.py
- __init__.py
- synth.py
- __init__.py
- core.py
- datasets.py
- load.py
- metrics.py
- utils.py
- .readthedocs.yaml
- CITATION.cff
- CONTRIBUTING.rst
- LICENSE
- MANIFEST.in
- pyproject.toml
- README.md
// repository documentation
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