HistGen
[MICCAI 2024] Official Repo of "HistGen: Histopathology Report Generation via Local-Global Feature Encoding and Cross-modal Context Interaction"
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최종 버전 다운로드 (.zip)- wsi-report-data.csv
- wsi-report-data_no_duplicate.csv
- __init__.py
- dataset_generic.py
- dataset_h5.py
- wsi_dataset.py
- tcga-wsi-report.sh
- __init__.py
- class_map.py
- constants.py
- parser.py
- parser_factory.py
- parser_image_folder.py
- parser_image_in_tar.py
- parser_image_tar.py
- parser_tfds.py
- __init__.py
- auto_augment.py
- config.py
- constants.py
- dataset.py
- dataset_factory.py
- distributed_sampler.py
- loader.py
- mixup.py
- random_erasing.py
- real_labels.py
- tf_preprocessing.py
- transforms.py
- transforms_factory.py
- __init__.py
- asymmetric_loss.py
- binary_cross_entropy.py
- cross_entropy.py
- jsd.py
- __init__.py
- activations.py
- activations_jit.py
- activations_me.py
- adaptive_avgmax_pool.py
- attention_pool2d.py
- blur_pool.py
- bottleneck_attn.py
- cbam.py
- classifier.py
- cond_conv2d.py
- config.py
- conv2d_same.py
- conv_bn_act.py
- create_act.py
- create_attn.py
- create_conv2d.py
- create_norm_act.py
- drop.py
- eca.py
- evo_norm.py
- gather_excite.py
- global_context.py
- halo_attn.py
- helpers.py
- inplace_abn.py
- lambda_layer.py
- linear.py
- median_pool.py
- mixed_conv2d.py
- mlp.py
- non_local_attn.py
- norm.py
- norm_act.py
- padding.py
- patch_embed.py
- pool2d_same.py
- selective_kernel.py
- separable_conv.py
- space_to_depth.py
- split_attn.py
- split_batchnorm.py
- squeeze_excite.py
- std_conv.py
- test_time_pool.py
- trace_utils.py
- weight_init.py
- ecaresnet101d_pruned.txt
- ecaresnet50d_pruned.txt
- efficientnet_b1_pruned.txt
- efficientnet_b2_pruned.txt
- efficientnet_b3_pruned.txt
- __init__.py
- beit.py
- byoanet.py
- byobnet.py
- cait.py
- coat.py
- convit.py
- convmixer.py
- convnext.py
- crossvit.py
- cspnet.py
- densenet.py
- dla.py
- dpn.py
- efficientnet.py
- efficientnet_blocks.py
- efficientnet_builder.py
- factory.py
- features.py
- fx_features.py
- ghostnet.py
- gluon_resnet.py
- gluon_xception.py
- hardcorenas.py
- helpers.py
- hrnet.py
- hub.py
- inception_resnet_v2.py
- inception_v3.py
- inception_v4.py
- levit.py
- mlp_mixer.py
- mobilenetv3.py
- nasnet.py
- nest.py
- nfnet.py
- pit.py
- pnasnet.py
- registry.py
- regnet.py
- res2net.py
- resnest.py
- resnet.py
- resnetv2.py
- rexnet.py
- selecsls.py
- senet.py
- sknet.py
- swin_transformer.py
- tnt.py
- tresnet.py
- twins.py
- vgg.py
- visformer.py
- vision_transformer.py
- vision_transformer_hybrid.py
- vovnet.py
- xception.py
- xception_aligned.py
- xcit.py
- __init__.py
- adabelief.py
- adafactor.py
- adahessian.py
- adamp.py
- adamw.py
- lamb.py
- lars.py
- lookahead.py
- madgrad.py
- nadam.py
- nvnovograd.py
- optim_factory.py
- radam.py
- rmsprop_tf.py
- sgdp.py
- __init__.py
- cosine_lr.py
- multistep_lr.py
- plateau_lr.py
- poly_lr.py
- scheduler.py
- scheduler_factory.py
- step_lr.py
- tanh_lr.py
- __init__.py
- agc.py
- checkpoint_saver.py
- clip_grad.py
- cuda.py
- distributed.py
- jit.py
- log.py
- metrics.py
- misc.py
- model.py
- model_ema.py
- random.py
- summary.py
- __init__.py
- version.py
- timm-0.5.4-py3.10.egg
- __init__.py
- class_map.py
- constants.py
- parser.py
- parser_factory.py
- parser_image_folder.py
- parser_image_in_tar.py
- parser_image_tar.py
- parser_tfds.py
- __init__.py
- auto_augment.py
- config.py
- constants.py
- dataset.py
- dataset_factory.py
- distributed_sampler.py
- loader.py
- mixup.py
- random_erasing.py
- real_labels.py
- tf_preprocessing.py
- transforms.py
- transforms_factory.py
- __init__.py
- asymmetric_loss.py
- binary_cross_entropy.py
- cross_entropy.py
- jsd.py
- __init__.py
- activations.py
- activations_jit.py
- activations_me.py
- adaptive_avgmax_pool.py
- attention_pool2d.py
- blur_pool.py
- bottleneck_attn.py
- cbam.py
- classifier.py
- cond_conv2d.py
- config.py
- conv2d_same.py
- conv_bn_act.py
- create_act.py
- create_attn.py
- create_conv2d.py
- create_norm_act.py
- drop.py
- eca.py
- evo_norm.py
- gather_excite.py
- global_context.py
- halo_attn.py
- helpers.py
- inplace_abn.py
- lambda_layer.py
- linear.py
- median_pool.py
- mixed_conv2d.py
- mlp.py
- non_local_attn.py
- norm.py
- norm_act.py
- padding.py
- patch_embed.py
- pool2d_same.py
- selective_kernel.py
- separable_conv.py
- space_to_depth.py
- split_attn.py
- split_batchnorm.py
- squeeze_excite.py
- std_conv.py
- test_time_pool.py
- trace_utils.py
- weight_init.py
- ecaresnet101d_pruned.txt
- ecaresnet50d_pruned.txt
- efficientnet_b1_pruned.txt
- efficientnet_b2_pruned.txt
- efficientnet_b3_pruned.txt
- __init__.py
- beit.py
- byoanet.py
- byobnet.py
- cait.py
- coat.py
- convit.py
- convmixer.py
- convnext.py
- crossvit.py
- cspnet.py
- densenet.py
- dla.py
- dpn.py
- efficientnet.py
- efficientnet_blocks.py
- efficientnet_builder.py
- factory.py
- features.py
- fx_features.py
- ghostnet.py
- gluon_resnet.py
- gluon_xception.py
- hardcorenas.py
- helpers.py
- hrnet.py
- hub.py
- inception_resnet_v2.py
- inception_v3.py
- inception_v4.py
- levit.py
- mlp_mixer.py
- mobilenetv3.py
- nasnet.py
- nest.py
- nfnet.py
- pit.py
- pnasnet.py
- registry.py
- regnet.py
- res2net.py
- resnest.py
- resnet.py
- resnetv2.py
- rexnet.py
- selecsls.py
- senet.py
- sknet.py
- swin_transformer.py
- tnt.py
- tresnet.py
- twins.py
- vgg.py
- visformer.py
- vision_transformer.py
- vision_transformer_hybrid.py
- vovnet.py
- xception.py
- xception_aligned.py
- xcit.py
- __init__.py
- adabelief.py
- adafactor.py
- adahessian.py
- adamp.py
- adamw.py
- lamb.py
- lars.py
- lookahead.py
- madgrad.py
- nadam.py
- nvnovograd.py
- optim_factory.py
- radam.py
- rmsprop_tf.py
- sgdp.py
- __init__.py
- cosine_lr.py
- multistep_lr.py
- plateau_lr.py
- poly_lr.py
- scheduler.py
- scheduler_factory.py
- step_lr.py
- tanh_lr.py
- __init__.py
- agc.py
- checkpoint_saver.py
- clip_grad.py
- cuda.py
- distributed.py
- jit.py
- log.py
- metrics.py
- misc.py
- model.py
- model_ema.py
- random.py
- summary.py
- __init__.py
- version.py
- dependency_links.txt
- PKG-INFO
- requires.txt
- SOURCES.txt
- top_level.txt
- LICENSE
- MANIFEST.in
- PKG-INFO
- README.md
- setup.cfg
- setup.py
- ctranspath.pth
- dinov2_cpath_v1.pth
- timm-0.5.4.tar
- __init__.cpython-310.pyc
- vision_transformer.cpython-310.pyc
- __init__.cpython-310.pyc
- __init__.cpython-39.pyc
- attention.cpython-310.pyc
- attention.cpython-39.pyc
- block.cpython-310.pyc
- block.cpython-39.pyc
- dino_head.cpython-310.pyc
- dino_head.cpython-39.pyc
- drop_path.cpython-310.pyc
- drop_path.cpython-39.pyc
- layer_scale.cpython-310.pyc
- layer_scale.cpython-39.pyc
- mlp.cpython-310.pyc
- mlp.cpython-39.pyc
- patch_embed.cpython-310.pyc
- patch_embed.cpython-39.pyc
- swiglu_ffn.cpython-310.pyc
- swiglu_ffn.cpython-39.pyc
- __init__.py
- attention.py
- block.py
- dino_head.py
- drop_path.py
- layer_scale.py
- mlp.py
- patch_embed.py
- swiglu_ffn.py
- __init__.py
- vision_transformer.py
- __init__.py
- tcga-wsi-report.sh
- bwh_biopsy.csv
- bwh_resection.csv
- tcga.csv
- __init__.py
- comm_utils.py
- file_utils.py
- hit_cache.py
- pos_embed.py
- utils.py
- batch_process_utils.py
- util_classes.py
- WholeSlideImage.py
- wsi_utils.py
- build_preset.py
- create_patches.py
- create_patches_fp.py
- create_splits_seq.py
- extract_features.py
- extract_features_fp.py
- LICENSE.md
- histgen_model.cpython-310.pyc
- __init__.cpython-38.pyc
- att_model_r2gen.cpython-38.pyc
- caption_model_r2gen.cpython-38.pyc
- captioning_model.cpython-38.pyc
- containers.cpython-38.pyc
- utils_r2gen.cpython-38.pyc
- __init__.cpython-38.pyc
- beam_search.cpython-38.pyc
- __init__.py
- beam_search.py
- __init__.cpython-38.pyc
- attention.cpython-38.pyc
- decoders.cpython-38.pyc
- encoders.cpython-38.pyc
- transformer.cpython-38.pyc
- utils.cpython-38.pyc
- __init__.py
- attention.py
- decoders.py
- encoders.py
- transformer.py
- utils.py
- __init__.cpython-38.pyc
- typing.cpython-38.pyc
- utils.cpython-38.pyc
- __init__.py
- typing.py
- utils.py
- __init__.py
- att_model_r2gen.py
- caption_model_r2gen.py
- captioning_model.py
- containers.py
- utils_r2gen.py
- histgen_model.py
- M2Transformer.py
- PlainTransformer.py
- PlainTransformer_Modules.py
- r2gen.py
- r2gen_cmn.py
- ShowTellModel.py
- ShowTellModel_Modules.py
- UpDownAttn.py
- __init__.cpython-310.pyc
- att_model.cpython-310.pyc
- caption_model.cpython-310.pyc
- dataloaders.cpython-310.pyc
- datasets.cpython-310.pyc
- histgen_module.cpython-310.pyc
- loss.cpython-310.pyc
- metrics.cpython-310.pyc
- optimizers.cpython-310.pyc
- tokenizers.cpython-310.pyc
- trainer_AllinOne.cpython-310.pyc
- utils.cpython-310.pyc
- visual_extractor.cpython-310.pyc
- __init__.py
- att_model.py
- att_model_r2gen.py
- caption_model.py
- dataloaders.py
- datasets.py
- encoder_decoder.py
- fc_model.py
- histgen_module.py
- loss.py
- metrics.py
- optimizers.py
- tester_AllinOne.py
- tokenizers.py
- trainer_AllinOne.py
- utils.py
- visual_extractor.py
- wsi_token_select.py
- __init__.cpython-38.pyc
- att_model.cpython-38.pyc
- base_cmn.cpython-38.pyc
- caption_model.cpython-38.pyc
- dataloaders.cpython-38.pyc
- datasets.cpython-38.pyc
- encoder_decoder.cpython-38.pyc
- loss.cpython-38.pyc
- metrics.cpython-38.pyc
- optimizers.cpython-38.pyc
- tokenizers.cpython-38.pyc
- trainer.cpython-38.pyc
- trainer_r2gen.cpython-38.pyc
- utils.cpython-38.pyc
- visual_extractor.cpython-38.pyc
- __init__.py
- att_model.py
- base_cmn.py
- caption_model.py
- dataloaders.py
- datasets.py
- encoder_decoder.py
- loss.py
- metrics.py
- optimizers.py
- tester.py
- tokenizers.py
- trainer.py
- trainer_r2gen.py
- utils.py
- visual_extractor.py
- __init__.cpython-310.pyc
- __init__.cpython-38.pyc
- __init__.cpython-310.pyc
- __init__.cpython-38.pyc
- bleu.cpython-310.pyc
- bleu.cpython-38.pyc
- bleu_scorer.cpython-310.pyc
- bleu_scorer.cpython-38.pyc
- __init__.py
- bleu.py
- bleu_scorer.py
- LICENSE
- __init__.py
- cider.py
- cider_scorer.py
- __init__.cpython-310.pyc
- __init__.cpython-38.pyc
- meteor.cpython-310.pyc
- meteor.cpython-38.pyc
- paraphrase-en.gz
- __init__.py
- meteor-1.5.jar
- meteor.py
- __init__.cpython-310.pyc
- __init__.cpython-38.pyc
- rouge.cpython-310.pyc
- rouge.cpython-38.pyc
- __init__.py
- rouge.py
- __init__.py
- ptbtokenizer.py
- stanford-corenlp-3.4.1.jar
- __init__.py
- eval.py
- license.txt
- README.md
- wsi_report.csv
- .gitattributes
- LICENSE
- main_test_AllinOne.py
- main_train_AllinOne.py
- methodology.png
- README.md
- replace_pt_path.py
- requirements.yml
- test_wsi_report.sh
- train_wsi_report.sh
- train_wsi_report_baselines.sh
// repository documentation
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