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course_RNA-seq2017
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| <img src="https://raw.githubusercontent.com/abcdbug/dbug/master/WCM_logo.png" alt="WCM" style="height: 20px;"/> | [Applied Bioinformatics Core](https://abc.med.cornell.edu) | |---------------|---------------| # RNA-seq course 2017 Here, you can find the `Rmarkdown` files that we used during the last two days of our class. They may not be completely fool proof since I have not tested them extensively, but they should give you a good idea of what we did during class. The full 80+pages course notes can be found in the folder here in this repo, or go to our [server](http://chagall.med.cornell.edu/RNASEQcourse/Intro2RNAseq.pdf). Before there was [MultiQC](http://multiqc.info/), you had to do your QC output wrangling yourself. [This repo for previous class versions](https://github.com/friedue/course_RNA-seq2015) contains additional scripts that show you how some of the images (e.g., the bar charts of read alignment percentages) within the report were produced. ----------------------------------------- [return to course material website at WCMC](http://chagall.med.cornell.edu/RNASEQcourse/)