nimble
The base NIMBLE package for R
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최종 버전 다운로드 (.zip)- ci.yaml
- .gitignore
- bnp_ModelsAndSamplers.pdf
- bnp_ModelsAndSamplers.tex
- ModelsAndSamplers.tex
- test-ADdists-full.R
- test-ADmodels-full.R
- glmmbiom.R
- glmmPoisNB.R
- lmm.cpp
- lmmNimble.R
- lmmTMB.R
- pumpNimble.R
- pumpTMB.cpp
- pumpTMB.R
- spatial.cpp
- spatial_data.R
- spatialNimble.R
- spatialTMB.R
- thetalog.cpp
- thetalog.dat
- thetalogNimble.R
- thetalogTMB.R
- dipper-data.R
- dipper.bug
- bench.R
- check.R
- Rcheck.R
- bench-test1.R
- bench-test2.R
- bench-test3.R
- blocker-data.R
- blocker-init.R
- blocker.bug
- blockert-init.R
- blockert.bug
- blockht-data.R
- blockht.bug
- notest2.cmd
- notest3.cmd
- ReadMe
- test1.cmd
- test1.R
- bench-test1.R
- bones-data.R
- bones-init.R
- bones.bug
- test1.cmd
- test1.R
- bench-test1.R
- dyes-data.R
- dyes-init.R
- dyes.bug
- test1.cmd
- test1.R
- bench-test1.R
- bench-test2.R
- epil-data.R
- epil-inits.R
- epil2.bug
- epil3.bug
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- bench-test1.R
- bench-test2.R
- equiv-data.R
- equiv-init.R
- equiv.bug
- equivmiss-data.R
- ReadMe
- test1.cmd
- test1.R
- test2.cmd
- bench-test1.R
- inhaler-data.R
- inhaler-inits.R
- inhaler.bug
- inhaler.cmd
- test1.cmd
- test1.R
- bench-test1.R
- kidney-data.R
- kidney-init.R
- kidney.bug
- notest1.cmd
- ReadMe
- bench-test1.R
- leuk-data.R
- leuk-init.R
- leuk-poisson.bug
- leuk-s.dat
- leuk.bug
- leuk.in
- leukfr-s.dat
- leukfr.bug
- leukfr.dat
- leukfr.in
- test1.cmd
- test1.R
- bench-test1.R
- line-data.R
- line-inits.R
- line.bug
- test1.cmd
- test1.R
- bench-test1.R
- litters-data.R
- litters-init.R
- litters.bug
- ReadMe
- test1.cmd
- test1.R
- bench-test1.R
- bench-test2.R
- lsat-data.R
- lsat-init.R
- lsat.bug
- lsat.dat
- lsat2-init.R
- lsat2.bug
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- bench-test1.R
- mice-data.R
- mice-init.R
- mice.bug
- test1.cmd
- test1.R
- bench-test1.R
- oxford-data.R
- oxford-init.R
- oxford.bug
- oxford.dat
- ReadMe
- test1.cmd
- test1.R
- bench-test1.R
- pump-data.R
- pump-init.R
- pump.bug
- test1.cmd
- test1.R
- bench-test1.R
- bench-test2.R
- rats-data.R
- rats-init.R
- rats.bug
- ratsmiss-data.R
- test1.cmd
- test1.R
- test2.cmd
- bench-test1.R
- bench-test2.R
- salm-data.R
- salm-init.R
- salm-pareto.bug
- salm.bug
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- bench-test1.R
- bench-test2.R
- bench-test3.R
- bench-test4.R
- bench-test5.R
- seeds-data.R
- seeds-init.R
- seeds.bug
- seedspar.bug
- seedssig.bug
- seedsuni.bug
- seedszro.bug
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- test3.cmd
- test3.R
- test4.cmd
- test4.R
- test5.cmd
- test5.R
- air-data.R
- air-inits.R
- air.bug
- bench-test1.R
- bench.R
- notest1.cmd
- ReadMe
- alli-data.R
- alli-inits.R
- alli.bug
- bench-test1.R
- test1.cmd
- test1.R
- asia-data.R
- asia.bug
- asia2-data.R
- asia2.bug
- bench-test1.R
- bench-test2.R
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- beetles-cloglog.bug
- beetles-data.R
- beetles-inits.R
- beetles-logit.bug
- beetles-probit.bug
- bench-test1.R
- bench-test2.R
- bench-test3.R
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- test3.cmd
- test3.R
- bench-test1.R
- biops-data.R
- biops-inits.R
- biops.bug
- ReadMe
- test1.cmd
- test1.R
- bench-test1.R
- bench-test2.R
- bench-test3.R
- bench-test4.R
- birats-data.R
- birats-inits.R
- birats1.bug
- birats2.bug
- birats3.bug
- birats4.bug
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- test3.cmd
- test3.R
- test4.cmd
- test4.R
- cervix-data.R
- cervix-inits.R
- cervix.bug
- ReadMe
- test1.cmd
- test1.R
- bench-test1.R
- dugongs-data.R
- dugongs-inits.R
- dugongs.bug
- test1.cmd
- test1.R
- bench-test1.R
- eyes-data.R
- eyes-inits.R
- eyes.bug
- eyes.dat
- eyes2.bug
- notest2.cmd
- ReadMe
- test1.cmd
- test1.R
- bench-test1.R
- hearts-data.R
- hearts-inits.R
- hearts.bug
- hearts.dat
- test1.cmd
- test1.R
- bench-test1.R
- bench.R
- ice-data.R
- ice-inits.R
- icear.bug
- ReadMe
- test1.cmd
- bench-test1.R
- bench-test2.R
- bench-test3.R
- jaw-constant.bug
- jaw-data.R
- jaw-inits.R
- jaw-linear.bug
- jaw-quadratic.bug
- ReadMe
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- test3.cmd
- test3.R
- bench-test1.R
- bench-test2.R
- mvotree-data.R
- mvotree-inits.R
- mvotree.bug
- orange-data.R
- orange-inits.R
- otree.bug
- otree.dat
- otree.in
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- bench-test1.R
- pigs-data.R
- pigs-inits.R
- pigs.bug
- test1.cmd
- test1.R
- bench-test1.R
- schools-data.R
- schools-inits.R
- schools.bug
- schools.dat
- test.bug
- test1.cmd
- test1.R
- bench-test1.R
- bench-test2.R
- notest3.cmd
- notest4.cmd
- ReadMe
- stagnant-data.R
- stagnant-inits1.R
- stagnant-inits2.R
- stagnant-inits3.R
- stagnant-inits4.R
- stagnant.bug
- stagnant2.bug
- test1.cmd
- test1.R
- test2.cmd
- test2.R
- LICENSE
- ReadMe
- .gitignore
- accessorClasses.cpp
- customizeMakeconf.R
- dists.cpp
- dllFinalizer.cpp
- EigenTypedefs.cpp
- eigenUsingClasses.cpp
- GNUmakefile
- GNUmakefile_customizeMakeconf
- Makevars.in
- ModelClassUtils.cpp
- NamedObjects.cpp
- nimbleCppAD.cpp
- nimbleGraph.cpp
- nimDerivs_atomic_backsolve.cpp
- nimDerivs_atomic_cache.cpp
- nimDerivs_atomic_cholesky.cpp
- nimDerivs_atomic_classes.cpp
- nimDerivs_atomic_classes_temp.cpp
- nimDerivs_atomic_dyn_ind.cpp
- nimDerivs_atomic_forwardsolve.cpp
- nimDerivs_atomic_log_pow_int.cpp
- nimDerivs_atomic_matinverse.cpp
- nimDerivs_atomic_matmult.cpp
- nimDerivs_atomic_PDinverse_logdet.cpp
- nimDerivs_atomic_pow_int.cpp
- nimDerivs_atomic_probit.cpp
- nimDerivs_atomic_solve_base.cpp
- nimDerivs_atomic_solve_generic.cpp
- nimDerivs_atomic_zround.cpp
- nimDists.cpp
- nimIntegrate.cpp
- nimOptim.cpp
- nodeFun.cpp
- predefinedNimbleLists.cpp
- RcppNimbleUtils.cpp
- RcppUtils.cpp
- removeCustomizedMakeconf.R
- smartPtrs.cpp
- Utils.cpp
- devel.omh
- hes_sparsity.hpp
- jac_sparsity.hpp
- atomic.hpp
- atomic.omh
- call.hpp
- ctor.hpp
- for_type.hpp
- forward.hpp
- hes_sparsity.hpp
- jac_sparsity.hpp
- rev_depend.hpp
- reverse.hpp
- atomic.hpp
- afun.hpp
- atomic.hpp
- atomic.omh
- ctor.hpp
- for_type.hpp
- forward.hpp
- hes_sparsity.hpp
- jac_sparsity.hpp
- rev_depend.hpp
- reverse.hpp
- afun.hpp
- atomic.hpp
- clear.hpp
- ctor.hpp
- for_sparse_hes.hpp
- for_sparse_jac.hpp
- forward.hpp
- option.hpp
- rev_depend.hpp
- rev_sparse_hes.hpp
- rev_sparse_jac.hpp
- reverse.hpp
- atomic.omh
- chkpoint_one.hpp
- ctor.hpp
- for_sparse_jac.hpp
- forward.hpp
- rev_sparse_hes.hpp
- rev_sparse_jac.hpp
- reverse.hpp
- set_hes_sparse_bool.hpp
- set_hes_sparse_set.hpp
- set_jac_sparse_bool.hpp
- set_jac_sparse_set.hpp
- chk_fun.omh
- chkpoint_two.hpp
- ctor.hpp
- dynamic.hpp
- for_type.hpp
- forward.hpp
- hes_sparsity.hpp
- jac_sparsity.hpp
- rev_depend.hpp
- reverse.hpp
- devel.omh
- discrete.hpp
- user.omh
- compare_change.omh
- devel.omh
- forward.hpp
- forward.omh
- forward_dir.omh
- forward_one.omh
- forward_order.omh
- forward_two.omh
- forward_zero.omh
- size_order.omh
- cpp_ad_graph.omh
- cpp_graph.hpp
- cpp_graph.omh
- from_graph.hpp
- from_json.hpp
- graph_op_enum.hpp
- json_ad_graph.omh
- json_graph_op.omh
- to_graph.hpp
- to_json.hpp
- devel.omh
- independent.hpp
- user.omh
- user.omh
- vec_ad.hpp
- abort_recording.hpp
- abs.hpp
- abs_normal_fun.hpp
- ad.hpp
- ad_assign.hpp
- ad_binary.hpp
- ad_ctor.hpp
- ad_fun.hpp
- ad_fun.omh
- ad_io.hpp
- ad_to_string.hpp
- ad_type.hpp
- ad_valued.hpp
- add.hpp
- add_eq.hpp
- arithmetic.hpp
- atan2.hpp
- azmul.hpp
- base2ad.hpp
- base_complex.hpp
- base_cond_exp.hpp
- base_double.hpp
- base_float.hpp
- base_hash.hpp
- base_limits.hpp
- base_std_math.hpp
- base_to_string.hpp
- bender_quad.hpp
- bool_fun.hpp
- bool_valued.hpp
- capacity_order.hpp
- check_for_nan.hpp
- compare.hpp
- compound_assign.hpp
- con_dyn_var.hpp
- cond_exp.hpp
- convert.hpp
- cppad_assert.hpp
- dependent.hpp
- div.hpp
- div_eq.hpp
- drivers.hpp
- epsilon.hpp
- equal_op_seq.hpp
- for_hes_sparsity.hpp
- for_jac_sparsity.hpp
- for_one.hpp
- for_sparse_hes.hpp
- for_sparse_jac.hpp
- for_two.hpp
- fun_check.hpp
- fun_construct.hpp
- fun_eval.hpp
- fun_property.omh
- function_name.omh
- hash_code.hpp
- hessian.hpp
- identical.hpp
- integer.hpp
- jacobian.hpp
- lu_ratio.hpp
- mul.hpp
- mul_eq.hpp
- near_equal_ext.hpp
- new_dynamic.hpp
- nimble_ADbase_extensions.hpp
- nimble_ADbase_tape_link_extensions.hpp
- num_skip.hpp
- numeric_limits.hpp
- omp_max_thread.hpp
- opt_val_hes.hpp
- optimize.hpp
- ordered.hpp
- parallel_ad.hpp
- pow.hpp
- print_for.hpp
- rev_hes_sparsity.hpp
- rev_jac_sparsity.hpp
- rev_one.hpp
- rev_sparse_hes.hpp
- rev_sparse_jac.hpp
- rev_two.hpp
- reverse.hpp
- sign.hpp
- sparse.hpp
- sparse_hes.hpp
- sparse_hessian.hpp
- sparse_jac.hpp
- sparse_jacobian.hpp
- standard_math.hpp
- std_math_11.hpp
- sub.hpp
- sub_eq.hpp
- subgraph_jac_rev.hpp
- subgraph_reverse.hpp
- subgraph_sparsity.hpp
- tape_link.hpp
- test_vector.hpp
- testvector.hpp
- unary_minus.hpp
- unary_plus.hpp
- undef.hpp
- user_ad.hpp
- value.hpp
- var2par.hpp
- zdouble.hpp
- base_lin_ode.hpp
- for_type.hpp
- forward.hpp
- get.hpp
- hes_sparsity.hpp
- implement.omh
- jac_sparsity.hpp
- lin_ode.hpp
- lin_ode.omh
- reverse.hpp
- set.hpp
- base_mat_mul.hpp
- for_type.hpp
- forward.hpp
- get.hpp
- hes_sparsity.hpp
- implement.omh
- jac_sparsity.hpp
- mat_mul.hpp
- mat_mul.omh
- rev_depend.hpp
- reverse.hpp
- set.hpp
- add_op.hpp
- div_op.hpp
- for_type.hpp
- forward_op.hpp
- hes_sparsity.hpp
- implement.omh
- jac_sparsity.hpp
- mul_op.hpp
- neg_op.hpp
- rev_depend.hpp
- reverse_op.hpp
- sub_op.hpp
- vector.hpp
- vector.omh
- mat_mul.hpp
- eigen_cholesky.hpp
- eigen_mat_inv.hpp
- eigen_mat_mul.hpp
- base_adolc.hpp
- code_gen_fun.hpp
- cppad_eigen.hpp
- eigen_plugin.hpp
- solve.hpp
- solve_callback.hpp
- solve_result.hpp
- cpp_graph_itr.hpp
- cpp_graph_itr.omh
- cpp_graph_op.hpp
- dev_graph.omh
- json_lexer.hpp
- json_lexer.omh
- json_parser.hpp
- json_writer.hpp
- abs_op.hpp
- acos_op.hpp
- acosh_op.hpp
- add_op.hpp
- asin_op.hpp
- asinh_op.hpp
- atan_op.hpp
- atanh_op.hpp
- binary_op.omh
- comp_op.hpp
- cond_op.hpp
- cos_op.hpp
- cosh_op.hpp
- cskip_op.hpp
- csum_op.hpp
- discrete_op.hpp
- div_op.hpp
- erf_op.hpp
- exp_op.hpp
- expm1_op.hpp
- load_op.hpp
- log1p_op.hpp
- log_op.hpp
- mul_op.hpp
- neg_op.hpp
- parameter_op.hpp
- pow_op.hpp
- print_op.hpp
- prototype_op.hpp
- sign_op.hpp
- sin_op.hpp
- sinh_op.hpp
- sqrt_op.hpp
- store_op.hpp
- sub_op.hpp
- tan_op.hpp
- tanh_op.hpp
- unary_op.omh
- zmul_op.hpp
- cexp_info.hpp
- csum_op_info.hpp
- csum_stacks.hpp
- get_cexp_info.hpp
- get_dyn_previous.hpp
- get_op_previous.hpp
- get_op_usage.hpp
- get_par_usage.hpp
- hash_code.hpp
- match_op.hpp
- optimize_run.hpp
- record_csum.hpp
- record_pv.hpp
- record_vp.hpp
- record_vv.hpp
- size_pair.hpp
- usage.hpp
- addr_enum.hpp
- atom_op_info.hpp
- player.hpp
- random_iterator.hpp
- random_setup.hpp
- sequential_iterator.hpp
- subgraph_iterator.hpp
- comp_op.hpp
- cond_exp.hpp
- put_dyn_atomic.hpp
- put_var_atomic.hpp
- put_var_vecad.hpp
- recorder.hpp
- recorder.omh
- binary_op.hpp
- dev_sparse.omh
- internal.hpp
- list_setvec.hpp
- list_setvec.omh
- pack_setvec.hpp
- pack_setvec.omh
- setvector.omh
- svec_setvec.hpp
- unary_op.hpp
- arg_variable.hpp
- entire_call.hpp
- get_rev.hpp
- info.hpp
- init_rev.hpp
- sparsity.hpp
- call_atomic.hpp
- dev_sweep.omh
- dynamic.hpp
- for_hes.hpp
- for_jac.hpp
- forward0.hpp
- forward1.hpp
- forward2.hpp
- rev_hes.hpp
- rev_jac.hpp
- reverse.hpp
- cppad_vector_itr.hpp
- vector_bool.hpp
- ad_tape.hpp
- atom_state.hpp
- atomic_index.hpp
- color_general.hpp
- color_symmetric.hpp
- cppad_colpack.hpp
- declare_ad.hpp
- define.hpp
- hash_code.hpp
- independent.hpp
- is_pod.hpp
- is_pod.hpp.in
- nimble_atomic_index.hpp
- op.hpp
- op_code_dyn.hpp
- op_code_var.hpp
- pod_vector.hpp
- set_get_in_parallel.hpp
- std_set.hpp
- det_33.hpp
- det_by_lu.hpp
- det_by_minor.hpp
- det_grad_33.hpp
- det_of_minor.hpp
- mat_sum_sq.hpp
- ode_evaluate.hpp
- sparse_hes_fun.hpp
- sparse_jac_fun.hpp
- uniform_01.hpp
- cppad_vector.omh
- dev_cppad_vector.omh
- dev_utility.omh
- dev_vector_bool.omh
- utility.omh
- check_numeric_type.hpp
- check_simple_vector.hpp
- elapsed_seconds.hpp
- error_handler.hpp
- index_sort.hpp
- lu_factor.hpp
- lu_invert.hpp
- lu_solve.hpp
- memory_leak.hpp
- nan.hpp
- near_equal.hpp
- ode_err_control.hpp
- ode_gear.hpp
- ode_gear_control.hpp
- omp_alloc.hpp
- poly.hpp
- pow_int.hpp
- romberg_mul.hpp
- romberg_one.hpp
- rosen_34.hpp
- runge_45.hpp
- set_union.hpp
- sparse2eigen.hpp
- sparse_rc.hpp
- sparse_rcv.hpp
- speed_test.hpp
- test_boolofvoid.hpp
- thread_alloc.hpp
- time_test.hpp
- to_string.hpp
- track_new_del.hpp
- vector.hpp
- vector_bool.hpp
- base_require.hpp
- configure.hpp
- COPYING
- cppad.hpp
- epl-2.0.txt
- utility.hpp
- wno_conversion.hpp
- LDLT.h
- LLT.h
- LLT_LAPACKE.h
- CholmodSupport.h
- Complex.h
- MathFunctions.h
- MatrixProduct.h
- MatrixProductCommon.h
- MatrixProductMMA.h
- PacketMath.h
- Complex.h
- MathFunctions.h
- PacketMath.h
- TypeCasting.h
- Complex.h
- MathFunctions.h
- PacketMath.h
- TypeCasting.h
- Complex.h
- BFloat16.h
- ConjHelper.h
- GenericPacketMathFunctions.h
- GenericPacketMathFunctionsFwd.h
- Half.h
- Settings.h
- TypeCasting.h
- MathFunctions.h
- PacketMath.h
- TypeCasting.h
- math_constants.h
- Complex.h
- MathFunctions.h
- PacketMath.h
- Complex.h
- GeneralBlockPanelKernel.h
- MathFunctions.h
- PacketMath.h
- TypeCasting.h
- Complex.h
- MathFunctions.h
- PacketMath.h
- TypeCasting.h
- MathFunctions.h
- PacketMath.h
- TypeCasting.h
- InteropHeaders.h
- MathFunctions.h
- PacketMath.h
- SyclMemoryModel.h
- TypeCasting.h
- Complex.h
- MathFunctions.h
- PacketMath.h
- AssignmentFunctors.h
- BinaryFunctors.h
- NullaryFunctors.h
- StlFunctors.h
- TernaryFunctors.h
- UnaryFunctors.h
- GeneralBlockPanelKernel.h
- GeneralMatrixMatrix.h
- GeneralMatrixMatrix_BLAS.h
- GeneralMatrixMatrixTriangular.h
- GeneralMatrixMatrixTriangular_BLAS.h
- GeneralMatrixVector.h
- GeneralMatrixVector_BLAS.h
- Parallelizer.h
- SelfadjointMatrixMatrix.h
- SelfadjointMatrixMatrix_BLAS.h
- SelfadjointMatrixVector.h
- SelfadjointMatrixVector_BLAS.h
- SelfadjointProduct.h
- SelfadjointRank2Update.h
- TriangularMatrixMatrix.h
- TriangularMatrixMatrix_BLAS.h
- TriangularMatrixVector.h
- TriangularMatrixVector_BLAS.h
- TriangularSolverMatrix.h
- TriangularSolverMatrix_BLAS.h
- TriangularSolverVector.h
- BlasUtil.h
- ConfigureVectorization.h
- Constants.h
- DisableStupidWarnings.h
- ForwardDeclarations.h
- IndexedViewHelper.h
- IntegralConstant.h
- Macros.h
- Memory.h
- Meta.h
- MKL_support.h
- NonMPL2.h
- ReenableStupidWarnings.h
- ReshapedHelper.h
- StaticAssert.h
- SymbolicIndex.h
- XprHelper.h
- ArithmeticSequence.h
- Array.h
- ArrayBase.h
- ArrayWrapper.h
- Assign.h
- Assign_MKL.h
- AssignEvaluator.h
- BandMatrix.h
- Block.h
- BooleanRedux.h
- CommaInitializer.h
- ConditionEstimator.h
- CoreEvaluators.h
- CoreIterators.h
- CwiseBinaryOp.h
- CwiseNullaryOp.h
- CwiseTernaryOp.h
- CwiseUnaryOp.h
- CwiseUnaryView.h
- DenseBase.h
- DenseCoeffsBase.h
- DenseStorage.h
- Diagonal.h
- DiagonalMatrix.h
- DiagonalProduct.h
- Dot.h
- EigenBase.h
- ForceAlignedAccess.h
- Fuzzy.h
- GeneralProduct.h
- GenericPacketMath.h
- GlobalFunctions.h
- IndexedView.h
- Inverse.h
- IO.h
- Map.h
- MapBase.h
- MathFunctions.h
- MathFunctionsImpl.h
- Matrix.h
- MatrixBase.h
- NestByValue.h
- NoAlias.h
- NumTraits.h
- PartialReduxEvaluator.h
- PermutationMatrix.h
- PlainObjectBase.h
- Product.h
- ProductEvaluators.h
- Random.h
- Redux.h
- Ref.h
- Replicate.h
- Reshaped.h
- ReturnByValue.h
- Reverse.h
- Select.h
- SelfAdjointView.h
- SelfCwiseBinaryOp.h
- Solve.h
- SolverBase.h
- SolveTriangular.h
- StableNorm.h
- StlIterators.h
- Stride.h
- Swap.h
- Transpose.h
- Transpositions.h
- TriangularMatrix.h
- VectorBlock.h
- VectorwiseOp.h
- Visitor.h
- ComplexEigenSolver.h
- ComplexSchur.h
- ComplexSchur_LAPACKE.h
- EigenSolver.h
- GeneralizedEigenSolver.h
- GeneralizedSelfAdjointEigenSolver.h
- HessenbergDecomposition.h
- MatrixBaseEigenvalues.h
- RealQZ.h
- RealSchur.h
- RealSchur_LAPACKE.h
- SelfAdjointEigenSolver.h
- SelfAdjointEigenSolver_LAPACKE.h
- Tridiagonalization.h
- Geometry_SIMD.h
- AlignedBox.h
- AngleAxis.h
- EulerAngles.h
- Homogeneous.h
- Hyperplane.h
- OrthoMethods.h
- ParametrizedLine.h
- Quaternion.h
- Rotation2D.h
- RotationBase.h
- Scaling.h
- Transform.h
- Translation.h
- Umeyama.h
- BlockHouseholder.h
- Householder.h
- HouseholderSequence.h
- BasicPreconditioners.h
- BiCGSTAB.h
- ConjugateGradient.h
- IncompleteCholesky.h
- IncompleteLUT.h
- IterativeSolverBase.h
- LeastSquareConjugateGradient.h
- SolveWithGuess.h
- Jacobi.h
- KLUSupport.h
- InverseSize4.h
- Determinant.h
- FullPivLU.h
- InverseImpl.h
- PartialPivLU.h
- PartialPivLU_LAPACKE.h
- MetisSupport.h
- blas.h
- Image.h
- Kernel.h
- lapack.h
- lapacke.h
- lapacke_mangling.h
- RealSvd2x2.h
- Amd.h
- Eigen_Colamd.h
- Ordering.h
- PardisoSupport.h
- PaStiXSupport.h
- ArrayCwiseBinaryOps.h
- ArrayCwiseUnaryOps.h
- BlockMethods.h
- CommonCwiseBinaryOps.h
- CommonCwiseUnaryOps.h
- IndexedViewMethods.h
- MatrixCwiseBinaryOps.h
- MatrixCwiseUnaryOps.h
- ReshapedMethods.h
- ColPivHouseholderQR.h
- ColPivHouseholderQR_LAPACKE.h
- CompleteOrthogonalDecomposition.h
- FullPivHouseholderQR.h
- HouseholderQR.h
- HouseholderQR_LAPACKE.h
- SimplicialCholesky.h
- SimplicialCholesky_impl.h
- AmbiVector.h
- CompressedStorage.h
- ConservativeSparseSparseProduct.h
- MappedSparseMatrix.h
- SparseAssign.h
- SparseBlock.h
- SparseColEtree.h
- SparseCompressedBase.h
- SparseCwiseBinaryOp.h
- SparseCwiseUnaryOp.h
- SparseDenseProduct.h
- SparseDiagonalProduct.h
- SparseDot.h
- SparseFuzzy.h
- SparseMap.h
- SparseMatrix.h
- SparseMatrixBase.h
- SparsePermutation.h
- SparseProduct.h
- SparseRedux.h
- SparseRef.h
- SparseSelfAdjointView.h
- SparseSolverBase.h
- SparseSparseProductWithPruning.h
- SparseTranspose.h
- SparseTriangularView.h
- SparseUtil.h
- SparseVector.h
- SparseView.h
- TriangularSolver.h
- SparseLU.h
- SparseLU_column_bmod.h
- SparseLU_column_dfs.h
- SparseLU_copy_to_ucol.h
- SparseLU_gemm_kernel.h
- SparseLU_heap_relax_snode.h
- SparseLU_kernel_bmod.h
- SparseLU_Memory.h
- SparseLU_panel_bmod.h
- SparseLU_panel_dfs.h
- SparseLU_pivotL.h
- SparseLU_pruneL.h
- SparseLU_relax_snode.h
- SparseLU_Structs.h
- SparseLU_SupernodalMatrix.h
- SparseLU_Utils.h
- SparseLUImpl.h
- SparseQR.h
- SuiteSparseQRSupport.h
- details.h
- StdDeque.h
- StdList.h
- StdVector.h
- SuperLUSupport.h
- BDCSVD.h
- JacobiSVD.h
- JacobiSVD_LAPACKE.h
- SVDBase.h
- UpperBidiagonalization.h
- UmfPackSupport.h
- Cholesky
- CholmodSupport
- Core
- Dense
- Eigen
- Eigenvalues
- Geometry
- Householder
- IterativeLinearSolvers
- Jacobi
- KLUSupport
- LU
- MetisSupport
- OrderingMethods
- PardisoSupport
- PaStiXSupport
- QR
- QtAlignedMalloc
- Sparse
- SparseCholesky
- SparseCore
- SparseLU
- SparseQR
- SPQRSupport
- StdDeque
- StdList
- StdVector
- SuperLUSupport
- SVD
- UmfPackSupport
- accessorClasses.h
- dists.h
- dllFinalizer.h
- dynamicRegistrations.h
- EigenTypedefs.h
- eigenUsingClasses.h
- Model.h
- ModelClassUtils.h
- NamedObjects.h
- NimArr.h
- NimArrBase.h
- nimbleCppAD.h
- nimbleCppADbaseClass.cpp
- nimbleCppADbaseClass.h
- nimbleEigen.h
- nimbleEigenNimArr.h
- nimbleGraph.h
- nimDerivs_atomic_backsolve.h
- nimDerivs_atomic_cache.h
- nimDerivs_atomic_cholesky.h
- nimDerivs_atomic_classes.h
- nimDerivs_atomic_discrete.h
- nimDerivs_atomic_dyn_ind.h
- nimDerivs_atomic_forwardsolve.h
- nimDerivs_atomic_log_pow_int.h
- nimDerivs_atomic_matinverse.h
- nimDerivs_atomic_matmult.h
- nimDerivs_atomic_PDinverse_logdet.h
- nimDerivs_atomic_pow_int.h
- nimDerivs_atomic_probit.h
- nimDerivs_atomic_solve_base.h
- nimDerivs_atomic_zround.h
- nimDerivs_dists.h
- nimDerivs_vecmat_utils.h
- nimDists.h
- nimIntegrate.h
- nimOptim.h
- nodeFun.h
- predefinedNimbleLists.h
- RcppNimbleUtils.h
- RcppUtils.h
- smartPtrs.h
- Utils.h
- Values.h
- ad.hpp
- atomic_index.hpp
- cppad_notes_for_nimble.txt
- nimble_ADbase_extensions.hpp
- nimble_ADbase_tape_link_extensions.hpp
- nimble_atomic_index.hpp
- tape_link.hpp
- .gitignore
- Makevars.in
- Makevars.win.in
- Makevars_lib.in
- CITATION
- COPYRIGHTS
- NEWS.md
- ADbreak.Rd
- ADNimbleList.Rd
- ADproxyModelClass-class.Rd
- any_na.Rd
- as.carAdjacency.Rd
- as.carCM.Rd
- asRow.Rd
- autoBlock.Rd
- BUGSdeclClass-class.Rd
- buildAuxiliaryFilter.Rd
- buildBootstrapFilter.Rd
- buildEnsembleKF.Rd
- buildIteratedFilter2.Rd
- buildLiuWestFilter.Rd
- buildMacro.Rd
- buildMCEM.Rd
- buildMCMC.Rd
- calculateWAIC.Rd
- CAR-Normal.Rd
- CAR-Proper.Rd
- CAR_calcNumIslands.Rd
- carBounds.Rd
- carMaxBound.Rd
- carMinBound.Rd
- Categorical.Rd
- checkInterrupt.Rd
- ChineseRestaurantProcess.Rd
- clearCompiled.Rd
- CmodelBaseClass-class.Rd
- CnimbleFunctionBase-class.Rd
- codeBlockClass-class.Rd
- compileNimble.Rd
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- Constraint.Rd
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- decideAndJump.Rd
- declare.Rd
- deregisterDistributions.Rd
- derived.Rd
- Dirichlet.Rd
- distributionInfo.Rd
- Double-Exponential.Rd
- eigenNimbleList.Rd
- expAv.Rd
- expm.Rd
- Exponential.Rd
- extractControlElement.Rd
- flat.Rd
- getBound.Rd
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- getConditionallyIndependentSets.Rd
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- getParam.Rd
- getSamplesDPmeasure.Rd
- getsize.Rd
- identityMatrix.Rd
- initializeModel.Rd
- Interval.Rd
- Inverse-Gamma.Rd
- Inverse-Wishart.Rd
- is.nf.Rd
- is.nl.Rd
- LKJ.Rd
- makeBoundInfo.Rd
- makeModelDerivsInfo.Rd
- makeParamInfo.Rd
- MCMCconf-class.Rd
- modelBaseClass-class.Rd
- modelDefClass-class.Rd
- modelInitialization.Rd
- modelValues.Rd
- modelValuesBaseClass-class.Rd
- modelValuesConf.Rd
- Multinomial.Rd
- Multivariate-t.Rd
- MultivariateNormal.Rd
- nfMethod.Rd
- nfVar.Rd
- nimble-internal.Rd
- nimble-math.Rd
- nimble-package.Rd
- nimble-R-functions.Rd
- nimbleCode.Rd
- nimbleExternalCall.Rd
- nimbleFunction.Rd
- nimbleFunctionBase-class.Rd
- nimbleFunctionList-class.Rd
- nimbleFunctionVirtual.Rd
- nimbleList.Rd
- nimbleMCMC.Rd
- nimbleModel.Rd
- nimbleOptions.Rd
- nimbleRcall.Rd
- nimbleType-class.Rd
- nimCat.Rd
- nimCopy.Rd
- nimDerivs.Rd
- nimDim.Rd
- nimEigen.Rd
- nimIntegrate.Rd
- nimMatrix.Rd
- nimNumeric.Rd
- nimOptim.Rd
- nimOptimDefaultControl.Rd
- nimOptimMethod.Rd
- nimPrint.Rd
- nimStop.Rd
- nimSvd.Rd
- nodeFunctions.Rd
- optimControlNimbleList.Rd
- optimDefaultControl.Rd
- optimResultNimbleList.Rd
- parameterTransform.Rd
- pow_int.Rd
- printErrors.Rd
- rankSample.Rd
- readBUGSmodel.Rd
- registerDistributions.Rd
- resize.Rd
- Rmatrix2mvOneVar.Rd
- RmodelBaseClass-class.Rd
- run.time.Rd
- runCrossValidate.Rd
- runLaplace.Rd
- runMCMC.Rd
- samplers.Rd
- setAndCalculate.Rd
- setAndCalculateOne.Rd
- setSize.Rd
- setupMargNodes.Rd
- setupOutputs.Rd
- simNodes.Rd
- simNodesMV.Rd
- singleVarAccessClass-class.Rd
- StickBreakingFunction.Rd
- summaryLaplace.Rd
- svdNimbleList.Rd
- t.Rd
- testBUGSmodel.Rd
- valueInCompiledNimbleFunction.Rd
- values.Rd
- waic.Rd
- waicDetailsNimbleList.Rd
- waicNimbleList.Rd
- Wishart.Rd
- withNimbleOptions.Rd
- .gitignore
- all_utils.R
- BNP_distributions.R
- BNP_samplers.R
- BUGS_BUGSdecl.R
- BUGS_contexts.R
- BUGS_getDependencies.R
- BUGS_graphNodeMaps.R
- BUGS_macros.R
- BUGS_mathCompatibility.R
- BUGS_model.R
- BUGS_modelDef.R
- BUGS_nimbleGraph.R
- BUGS_readBUGS.R
- BUGS_testBUGS.R
- BUGS_utils.R
- CAR.R
- config.R.in
- cppDefs_ADtools.R
- cppDefs_BUGSmodel.R
- cppDefs_core.R
- cppDefs_cppProject.R
- cppDefs_modelValues.R
- cppDefs_namedObjects.R
- cppDefs_nimbleFunction.R
- cppDefs_nimbleList.R
- cppDefs_outputCppFromRparseTree.R
- cppDefs_RCfunction.R
- cppDefs_utils.R
- cppDefs_variables.R
- cppInterfaces_models.R
- cppInterfaces_modelValues.R
- cppInterfaces_nimbleFunctions.R
- cppInterfaces_otherTypes.R
- cppInterfaces_utils.R
- crossValidation.R
- distributions_implementations.R
- distributions_inputList.R
- distributions_processInputList.R
- externalCalls.R
- genCpp_addDebugMarks.R
- genCpp_buildIntermediates.R
- genCpp_eigenization.R
- genCpp_exprClass.R
- genCpp_generateCpp.R
- genCpp_initSizes.R
- genCpp_insertAssertions.R
- genCpp_liftMaps.R
- genCpp_maps.R
- genCpp_operatorLists.R
- genCpp_processSpecificCalls.R
- genCpp_RparseTree2exprClasses.R
- genCpp_sizeProcessing.R
- genCpp_toEigenize.R
- initializeModel.R
- makevars.R
- MCEM_build.R
- MCMC_autoBlock.R
- MCMC_build.R
- MCMC_configuration.R
- MCMC_conjugacy.R
- MCMC_derived.R
- MCMC_RJ.R
- MCMC_run.R
- MCMC_samplers.R
- MCMC_utils.R
- MCMC_WAIC.R
- miscAlgorithms.R
- miscFunctions.R
- NF_utils.R
- nimble-package.r
- nimbleFunction_compile.R
- nimbleFunction_core.R
- nimbleFunction_keywordProcessing.R
- nimbleFunction_nodeFunction.R
- nimbleFunction_nodeFunctionNew.R
- nimbleFunction_Rderivs.R
- nimbleFunction_Rexecution.R
- nimbleFunction_util.R
- nimbleList_core.R
- nimbleProject.R
- normTooling.R
- options.R
- parameterTransform.R
- RCfunction_compile.R
- RCfunction_core.R
- registration.R
- setNimbleInternalFunctions.R
- setupMargNodes.R
- types_modelValues.R
- types_modelValuesAccessor.R
- types_modelVariableAccessor.R
- types_nimbleFunctionList.R
- types_nodeFxnVector.R
- types_numericLists.R
- types_symbolTable.R
- types_util.R
- zzz.R
- .gitignore
- DO_NOT_PUT_CODE_HERE_DO_IN_INST_CPPCODE
- Makevars.in
- Makevars.win
- nimble.cpp
- AD_distribution_test_lists.R
- AD_knownFailures.R
- AD_math_test_lists.R
- AD_test_utils.R
- barkerTestLog_Correct.Rout
- bnp_monteCarloTest.Rmd
- distributionsTestLog_Correct.Rout
- dynamicIndexingTestLists.R
- dynamicIndexingTestLog_Correct.Rout
- graphStructureTestLog_Correct.Rout
- mathTestLists.R
- mcemTestLog_Correct.Rout
- mcmcTestLog_Correct.Rout
- sizeTestLog_Correct.Rout
- test-ADbackSolve.R
- test-ADbasics.R
- test-ADchol.R
- test-ADdirsAndInds.R
- test-ADdists.R
- test-ADdmnorm.R
- test-ADdsl.R
- test-ADerrorTrapping.R
- test-ADforwardSolve.R
- test-ADfunctions.R
- test-ADmatInverse.R
- test-ADmatMult.R
- test-ADmatMult_model.R
- test-ADmodels-bigmv.R
- test-ADmodels.R
- test-ADoptim.R
- test-allocation.R
- test-benchmark-building-steps.R
- test-benchmarks.R
- test-bnp.R
- test-car.R
- test-checkDSL.R
- test-copy.R
- test-coreR.R
- test-crossVal.R
- test-declare.R
- test-derived-quantities.R
- test-distributions.R
- test-dsl_dists.R
- test-dynamicIndexing.R
- test-errors.R
- test-expandNodeNames.R
- test-externalCalls.R
- test-getBound.R
- test-getDependencies.R
- test-getDistributionInfo.R
- test-getParam.R
- test-graphStructure.R
- test-initializeModel.R
- test-integrate.R
- test-macros.R
- test-math.R
- test-mcem.R
- test-mcmc.R
- test-mcmcrj.R
- test-misc.R
- test-miscAlgorithms.R
- test-models.R
- test-modelValuesInterface.R
- test-nimbleFunctionInterfaces.R
- test-nimbleFunctionModelAccess.R
- test-nimbleList.R
- test-nimbleList_RCfun.R
- test-noncenteredSampler.R
- test-noSMC.R
- test-numericTypes.R
- test-optim.R
- test-options.R
- test-parameterTransform.R
- test-polyagamma.R
- test-returnTypeErrorTrapping.R
- test-setData.R
- test-setupMargNodes.R
- test-size.R
- test-testTools.R
- test-trunc.R
- test-user.R
- test-waic.R
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- test-mcmc-results-v0.4-1
- test-results-v0.4-1
- test-results-v0.5
- test-results-v0.5-1
- test-results-v0.6
- test-results-v0.6-1
- test-results-v0.6-2
- test-results-v0.6-3
- test-results-v0.6-4
- test-results-v0.6-5
- test_RW_multinomial.R
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- TOFIX
- truncation_changes.txt
- update_license.R
- linearRegressionGraph-1.png
- mcmcPump-1.png
- mcmcPump-2.png
- mcmcPump2-1.png
- mcmcPump2-2.png
- plotPump-1.png
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- UserManualRefs.el
- introExample_chunks.R
- programmingWithModels_chunks.R
- usingBugsModels_chunks.R
- writingModels_chunks.R
- BNPconjugacyTable.md
- BNPconjugacyTable2.md
- conjugacyTable.md
- coreRtableLong.md
- densityAliasesTable.md
- densityTableLong.md
- eigenSvdTableMatrixAsNimList.md
- eigenSvdTableMatrixElements.md
- functionTableLong.md
- functionTableMatrixLong.md
- linksTable.md
- parameterizationTableLong.md
- _bookdown.yml
- _output.yml
- ADreferences.bib
- chapter_AD.Rmd
- chapter_BNP.Rmd
- chapter_BuildingModels.Rmd
- chapter_DataStructures.Rmd
- chapter_InstallingNimble.Rmd
- chapter_Laplace.Rmd
- chapter_LightningIntroduction.Rmd
- chapter_MCMC.Rmd
- chapter_MoreIntroduction.Rmd
- chapter_OtherAlgorithms.Rmd
- chapter_ProgrammingOverview.Rmd
- chapter_RCfunctions.Rmd
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