rna-seq-pipeline
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최종 버전 다운로드 (.zip)- config.yml
- ENCFF001RTP_spikes_ENCFF335FFV_spikes.fasta.gz
- ENCFF159KBI_gencodeV29pri-UCSC-tRNAs-ERCC-phiX.gtf.gz
- ENCFF824ZKD_gencodeV24pri-tRNAs-ERCC-phiX.gtf.gz
- ENCFF871VGR_gencodeM21pri-UCSC-tRNAs-ERCC-phiX.gtf.gz
- gencode.v19.annotation.gtf.gz
- gencode.v19.trna.ercc.phix.gtf.gz
- gencode.v19.tRNAs.gtf.gz
- gencode.vM7.annotation.gtf.gz
- gencode.vM7.trna.ercc.phix.gtf.gz
- gencode.vM7.tRNAs.gtf.gz
- howto.md
- installation.md
- reference.md
- build_genome_index.wdl
- merge_anno.wdl
- __init__.py
- test_align.py
- test_compare_md5.py
- test_merge_annotation.py
- test_rna_qc.py
- test_rsem_quant.py
- __init__.py
- align.py
- bam_to_signals.py
- compare_md5.py
- kallisto_quant.py
- MAD.R
- mad_qc.py
- merge_annotation.py
- prep_kallisto.sh
- prep_rsem.sh
- prep_srna.sh
- prep_star.sh
- rna_qc.py
- rsem_quant.py
- dockstore_test_input.json
- test_align.wdl
- test_align_PE_input.json
- test_align_PE_reference_md5.json
- test_align_SE_input.json
- test_align_SE_reference_md5.json
- PE_stranded_input.json
- PE_stranded_reference_md5.json
- PE_unstranded_input.json
- PE_unstranded_reference_md5.json
- SE_unstranded_input.json
- SE_unstranded_reference_md5.json
- add_docker_image_tag_to_input.sh
- caper_run.sh
- cromwell_options.json
- ENCSR142YZV_chr19only_10000_reads_R1.fastq.gz
- ENCSR142YZV_chr19only_10000_reads_R1_part1.fastq.gz
- ENCSR142YZV_chr19only_10000_reads_R1_part2.fastq.gz
- ENCSR142YZV_chr19only_10000_reads_R2.fastq.gz
- ENCSR142YZV_chr19only_10000_reads_R2_part1.fastq.gz
- ENCSR142YZV_chr19only_10000_reads_R2_part2.fastq.gz
- ENCSR653DFZ_rep1_chr19_10000reads_R1.fastq.gz
- ENCSR653DFZ_rep1_chr19_10000reads_R2.fastq.gz
- ENCSR653DFZ_rep2_chr19_10000reads_R1.fastq.gz
- ENCSR653DFZ_rep2_chr19_10000reads_R2.fastq.gz
- ERCC_phiX.fa.gz
- gencodeV24pri-tRNAs-ERCC-phiX_onlychr19_and_spikeins.gtf.gz
- GRCh38_EBV.chrom.sizes
- GRCh38_no_alt_analysis_set_GCA_000001405.15_onlychr19.fa.gz
- GRCh38_v24_ERCC_phiX_rsemIndex_chr19only.tgz
- Homo_sapiens.GRCh38.cdna.all.chr19_ERCC_phix.fa.gz
- rep1_ENCSR510QZW_chr19only_10000_reads.fastq.gz
- rep1_ENCSR510QZW_chr19only_10000_reads_part1.fastq.gz
- rep1_ENCSR510QZW_chr19only_10000_reads_part2.fastq.gz
- rep2_ENCSR510QZW_chr19only_10000_reads.fastq.gz
- rep2_ENCSR510QZW_chr19only_10000_reads_part1.fastq.gz
- rep2_ENCSR510QZW_chr19only_10000_reads_part2.fastq.gz
- gencodeM21pri-UCSC-tRNAs-ERCC-phiX.transcript_id_to_genes.tsv
- gencodeV24pri-tRNAs-ERCC-phiX.transcript_id_to_genes.tsv
- gencodeV29pri-UCSC-tRNAs-ERCC-phiX.transcript_id_to_genes.tsv
- runtime.wdl
- cat.wdl
- gzip.wdl
- pbam.wdl
- .dockerignore
- .dockstore.yml
- .flake8
- .gitignore
- .isort.cfg
- .pre-commit-config.yaml
- Dockerfile
- LICENSE
- output_definition.json
- README.md
- rna-seq-pipeline.wdl
- test_env_requirements.txt
// repository documentation
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