Open3DSIM

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This code was created by Ruijie Cao and Prof. Peng Xi in Peking University for 3D SIM reconstruction.

Open3DSIM 최신버젼 다운로드

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# Open3DSIM
This code was created by Ruijie Cao and Prof. Peng Xi in Peking University for 3D super-resolution structure illumination microscopy reconstruction. 
We are devoted to make the SIM community open and constructive. And we will continue to improve the platform.

1. We provide the pure source code of three platforms of Open-3DSIM, including MATLAB, Fiji, and Exe.
2. The whole code files of three platforms can be downloaded from tags in this resposity.
3. The test_data.zip in tags provide three input format examples of OMX, N-SIM, and home-built 3DSIM systems. 
4. For more samples, please download from Figshare: https://figshare.com/articles/dataset/Open_3DSIM_DATA/21731315.
5. Each version contains a detailed user guide.
6. We also provide a video to guide users to install the Fiji version (on the above Fishare link) in Install_Fiji_Screenshot.mp4.

Licence

We claim an Apache licence for Open-3DSIM.

Reference

If you use one of the material provided within Open-3DSIM such as data or code, please cite our paper: 
    Cao R, Li Y, Chen X, et al. Open-3DSIM: an Open-source three-dimensional structured illumination microscopy reconstruction platform[J]. Nature Methods: 1-4 (2023).
    https://www.nature.com/articles/s41592-023-01958-0

Contact us:

For any questions, please contact caoruijie@stu.pku.edu.cn or xipeng@pku.edu.cn.

Updates:

2023.12.06 Someone reflects that Open-3DSIM(Fiji v2.2) has a bug on the step of "Process data". We have correct it.
    2023.06.28 We added the reconstruction of single-layer 3DSIM in version 2.2.

Tips:

Recently, we proposed an accelerated 3DSIM reconstruction based on spatial method called FO-3DSIM: https://github.com/Cao-ruijie/FO-3DSIM
    Open-3DSIM is robust and multi-platform compatible. FO-3DSIM is accelerated compared with Open-3DSIM, but needs higher requirement on estimated parameters.
    Users can choose according to their requirements.

Open3DSIM

Open3DSIM 최신버젼 다운로드

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