BioAutoMATED

(β˜… 172)

Automated machine learning for analyzing, interpreting, and designing biological sequences

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Download Latest Version (.zip)

Showing a partial file list β€” download the zip above to see everything.

  • .DS_Store
  • .gitignore
  • 01_BioAutoMATED_Small_System_Test_START_HERE.ipynb
  • 02_External_Validation_Tests.ipynb
  • 03_Interpretation_Module_Example.ipynb
  • 04_Design_Module_Example.ipynb
  • 05_Fine_Tuning_Model_Examples.ipynb
  • BioAutoMATED_Installation_Guide.md
  • Dockerfile
  • environment.yml
  • LICENSE.md
  • README.md

# Installation Guide

1. Get the code
git clone https://github.com/jackievaleri/BioAutoMATED

Downloads the entire project code from GitHub to your computer.

cd BioAutoMATED

Moves into the project folder you just downloaded.

2. Docker

Easy Recommended
Prerequisites
  • Git Needed to download the project code from GitHub.
  • Docker Desktop Needed to build and run containers. Install it and keep it running in the background.
docker build -t bioautomated .

Builds a runnable image based on the Dockerfile.

docker run -p 8080:80 bioautomated

Runs the built image as an actual container.

βœ… Run docker compose ps to check the containers are Up. If the README mentions a port, open http://localhost:PORT in your browser.

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