VisTrails

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VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

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- - __init__.py
  - cdat.sip
  - cdat.vt
  - cdat_cell.py
  - cdat_window.py
  - configure.py
  - graphics_method_controller.py
  - gui_controller.py
  - NOTES
  - pyqtscripting.sbf
  - quickplot.py
- - __init__.py
  - MANIFEST
- - __init__.py
  - MANIFEST
- - __init__.py
  - examples.vt
- - __init__.py
  - PDB.py
- - __init__.py
  - MANIFEST
- - __init__.py
  - FeatureExtractionFilters.py
  - filter_generator.py
  - GradientFilters.py
  - Image.py
  - ImageReader.py
  - IntensityFilters.py
  - ITK.py
  - itk_test_example.py
  - NeighborhoodFilters.py
  - PixelType.py
  - SegmentationFilters.py
  - SelectionFilters.py
  - SmoothingFilters.py
  - ThresholdFilters.py
- - __init__.py
- - __init__.py
  - Array.py
  - ArrayAccess.py
  - ArrayConvert.py
  - ArrayInterpolate.py
  - ArrayIO.py
  - ArrayOperations.py
  - ArrayPlot.py
  - ArrayUtilities.py
  - DSP.py
  - EnsembleOrdering.py
  - Filters.py
  - Imaging.py
  - Matrix.py
  - MatrixUtilities.py
  - smt.py
  - Stockwell.py
- - __init__.py
  - configuration.py
  - contour.vt
  - init.py
  - pv.vt
  - PVBase.py
  - pvcell.py
  - pvconfig.py
- - __init__.py
  - workflow.vt
  - workflow_ifs.vt
  - workflow_log.xml
  - workflow_log_err.xml
  - workflow_opm.xml
  - workflow_opm_err.xml
  - workflow_reg.xml
  - workflow_vt.xml
  - workflow_wf.xml
- - __init__.py
- - __init__.py
- - __init__.py
  - ColorBreaks.csv
  - enum_modules.py
  - enum_widget.py
  - init.py
  - layers.csv
  - layers.exampledata.csv
  - maxent.csv
  - SahmOutputViewer.py
  - SahmSpatialOutputViewer.py
  - SahmSpatialViewerCell.py
  - SahmViewerCell.py
  - SelectPredictorsLayers.py
  - utils.py
  - widgets.py
- - __init__.py
  - DSP.py
  - Filters.py
  - MatlabReader.py
  - Matrix.py
  - MatrixConvert.py
  - MatrixInfo.py
  - MatrixOperations.py
  - SciPy.py
- - __init__.py
  - cm2viewcell.py
  - renderbase.py
  - viewercell.py
- - __init__.py
  - current.vt
  - init.py
  - mycurrent.vt
  - mycurrent2.vt
- - __init__.py
  - CreateTestSurf.py
  - Makefile
  - pill.nodes
  - pill.tri
  - tetgen.i
  - TetGen.py
- - __init__.py
  - base_module.py
  - class_tree.py
  - fix_classes.py
  - hasher.py
  - init.py
  - inspectors.py
  - offscreen.py
  - tf_widget.py
  - vtk_parser.py
  - vtkcell.py
  - vtkcell_rc.py
  - vtkhandler.py
  - vtkviewcell.py
- - __init__.py
  - base_module.py
  - class_tree.py
  - fix_classes.py
  - hasher.py
  - init.py
  - inspectors.py
  - offscreen.py
  - tf_widget.py
  - vtk_parser.py
  - vtkcell.py
  - vtkcell_rc.py
  - vtkhandler.py
  - vtkviewcell.py
- meshutils.py
- poissonrecon.py
- trimesh2.py
- - build_from_source_mac.txt
  - build_from_source_windows.txt
  - setup_build_system_mac.txt
  - setup_build_system_windows.txt
- - analogies.rst
  - api_documentation.rst
  - batch.rst
  - cfassistant.rst
  - cltools.rst
  - conf.py
  - controlflow.rst
  - controlflowdev.rst
  - creating.rst
  - database.rst
  - developer.rst
  - example.rst
  - example_guide.rst
  - example_itk.rst
  - example_scikit_learn.rst
  - example_webservices.rst
  - getting_started.rst
  - groups.rst
  - index.rst
  - intro.rst
  - job_submission.rst
  - latex.rst
  - list_handling.rst
  - log.rst
  - make.bat
  - Makefile
  - mashups.rst
  - merging.rst
  - packages.rst
  - parallelflow.rst
  - parallelization.rst
  - parameter_exploration.rst
  - parameter_widgets.rst
  - persistent_archive.rst
  - preface.rst
  - provenance.rst
  - pythoncalc.rst
  - pythoncalc_file1.rst
  - querying.rst
  - spreadsheet.rst
  - streaming.rst
  - tabledata.rst
  - tej.rst
  - version_tree.rst
  - vistrails_server.rst
- custom_constants.txt
- parameter_exploration.txt
- vistrails.xsd
- - brain_output.xml
  - imagemagick.vt
  - ipython-notebook.ipynb
  - out_html.xml
  - outputs.vt
  - simplemath.vt
  - table.xml
  - vistrails_logo.png
- - Acorr_ex8.vt
  - annotate.vt
  - Arrow_ex9.vt
  - axhspan_ex5.vt
  - bar_ex1.vt
  - cohere.vt
  - contour.vt
  - contourf.vt
  - hist_ex1.vt
  - line2d_ex4.vt
  - line2d_ex7.vt
  - lineplot_ex3.vt
  - pcolor.vt
  - pie_ex1.vt
  - polar_ex10.vt
  - Psd.vt
  - ReadMe.txt
  - scatter.vt
  - semilog.vt
- - cross_val_score.vt
  - dimensionality_reduction.vt
  - grid_search.vt
  - pipeline.vt
  - roc_curve.vt
  - scoring.vt
  - support_vector_machine.vt
  - svm_decision_function.vt
- - cfassistant.vt
  - global_variables.vt
  - job_submission.vt
  - mashups.vt
  - parameter_exploration.vt
- bikes.vt
- brain_vistrail.vt
- chebi_webservice.vt
- gcd.vt
- hadoop-nodeinfo.vt
- head.vt
- infovis.vt
- list-handling.vt
- lung.vt
- mongodb.vt
- mta-yankees.vt
- mta.vt
- noaa_webservices.vt
- offscreen.vt
- plot.vt
- primes.vt
- protein_visualization.vt
- r_stats.vt
- spx.vt
- streaming.vt
- structure_or_id_webservice.vt
- tej-primes.vt
- tensorflow_mandelbrot.vt
- tensorflow_mnist.vt
- terminator.vt
- triangle_area.vt
- vtk.vt
- vtk_book_3rd_p189.vt
- vtk_book_3rd_p193.vt
- vtk_http.vt
- weather.vt
- - errors.vt
  - invalid-package.xml
  - too-recent.xml
- afront.xml
- corie.xml
- EMBOSS_webservices.vt
- KEGG_SearchEntities_webservice.vt
- KEGG_webservices.vt
- KEGGPathway.vt
- mummy.xml
- XSLTSample.xsl
- - config.php.sample
  - get_db_vistrail_list.php
  - get_vt_xml.php
  - get_wf_pdf.php
  - get_wf_xml.php
  - README
  - run_vistrails.php
- - crowdlabs.sty
  - example.pdf
  - example.tex
  - example2.bib
  - example2.pdf
  - example2.tex
  - fig1.png
  - fig2.png
  - find.cmd
  - head.pdf
  - head.tex
  - head.vt
  - includecrowdlabs.py
  - includevistrail.py
  - Makefile
  - README
  - test.sh
  - vistrails.sty
- - download.php
  - functions.php
  - README
  - vistrailsExtension.php
- - convert_files.sh
  - fix_file.py
- - pypi.sh
  - README.md
- - check_diffs.py
  - colors.py
  - convert_to_vt.py
  - copy_vtk_examples.py
  - examples_list.txt
  - gen_vtk_examples.py
  - get_vtk_examples.py
  - README
  - vtk_imposter.py
  - vtk_to_vt.py
- - main.py
  - module_appearance.py
  - module_appearance.ui
- - opm2dot.py
- add_future_import.py
- build_usersguide.py
- create_release_wiki_table.py
- create_server_media_dir_structure.py
- db_utils.py
- delete_from_db.py
- diff_package.py
- extract.py
- force_start_vistrails.py
- force_start_vistrails_nonohup.py
- generate_pkg_doc.py
- get_usersguide.py
- mac_update_bin.sh
- merge_vistrails.py
- release_notes.py
- restart-vistrails-server.sh
- retarget_mpl_libs.sh
- run_vistrails_batch_xvfb.sh
- sql_delete.py
- sql_to_xml.py
- start_vistrails.sh
- start_vistrails_xvfb.sh
- system_info.py
- unzip_vistrail.sh
- update_copyright_year.py
- update_db.py
- update_email_contact.py
- update_to_mod_bsd_license.py
- update_vistrails_command.py
- watch_vistrail_servers.py
- win_update_bin.sh
- - __init__.py
- - __init__.py
  - api.py
  - application.py
  - common.py
  - configuration.py
  - console_mode.py
  - debug.py
  - external_connection.py
  - inspector.py
  - keychain.py
  - packagemanager.py
  - packagerepository.py
  - param_explore.py
  - recent_vistrails.py
  - reportusage.py
  - requirements.py
  - startup.py
  - theme.py
  - thumbnails.py
  - upgradeworkflow.py
- - __init__.py
- - __init__.py
  - application.py
  - application_server.py
  - base_view.py
  - common_widgets.py
  - configuration.py
  - controlflow_assist.py
  - debug.py
  - debugger.py
  - graphics_view.py
  - job_monitor.py
  - merge_gui.py
  - module_annotation.py
  - module_configuration.py
  - module_documentation.py
  - module_info.py
  - module_options.py
  - module_palette.py
  - open_db_window.py
  - pipeline_view.py
  - pipeline_view_select.py
  - port_documentation.py
  - ports_pane.py
  - preferences.py
  - publishing.py
  - qt.py
  - query_view.py
  - repository.py
  - requirements.py
  - shell.py
  - theme.py
  - utils.py
  - variable_dropbox.py
  - version_prop.py
  - version_view.py
  - vis_diff.py
  - vistrail_controller.py
  - vistrail_variables.py
  - vistrail_view.py
  - vistrails_palette.py
  - vistrails_window.py
- - __init__.py
- - __init__.py
  - __main__.py
  - run_on_mac.sh
  - runtestsuite.py
  - utils.py
- __init__.py
- run.py
- stop_vistrails_server.py
- vistrails_server.py
.dockerignore
.gitignore
.travis.yml
CHANGELOG
dev-requirements.txt
Dockerfile
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
Vagrantfile

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