virtual-generalist

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virtual-generalist

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A complex co-morbidities module for the Synthea patient simulator.

virtual-generalist 최신버젼 다운로드

최종 버전 다운로드 (.zip)

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# virtual-generalist
Modeling complex co-morbidities in the Synthea patient simulator.

This project won second place in the 2021 [Synthetic Health Data Challenge](https://www.healthit.gov/topic/scientific-initiatives/pcor/synthetic-health-data-generation-accelerate-patient-centered-outcomes), sponsored by the HHS Office of the National Coordinator for Health Information Technology. All prize money was donated to [sustainable Harvest International](https://www.sustainableharvest.org/).

This work is described in the [final report](https://github.com/rmhorton/virtual-generalist/blob/main/Virtual_Generalist_report.pdf) and the validation approach is detailed in the [appendix](https://github.com/rmhorton/virtual-generalist/blob/main/validation/Virtual%20Generalist%20Validation%20Appendix.pdf).
We also have a [5-minute overview](https://youtu.be/HqB_thGSm1c) video.

## Contents of this repository

* [workshop](workshop): Open source educational materials for teaching introductory data science concepts with Synthea data.

* [docs](docs): HTML outputs visualized on [web pages](https://rmhorton.github.io/virtual-generalist/)

* [exp](exp): Experiments, examples, etc.
	
* [notebooks](notebooks): Databricks notebooks to run the feature engineering and model building code on simulated data. We include HTML versions as well, if you just want to read it or copy code.

* [system_data](system_data): data tables characterizing the current collection of Synthea modules, mapping ICD10 to SNOMED, etc.

* [validation](validation): quantifying distribution differences between real and simulated populations.

* [virtual_generalist_module](virtual_generalist_module): CKD stage-trasition module and lookup tables

## Links to Synthea resources

* Github repo for the Synthea patient simulation system:
https://github.com/synthetichealth/synthea

- The [Basic Setup and Running](https://github.com/synthetichealth/synthea/wiki/Basic-Setup-and-Running) page explains how to obtain and run the jar file without building the whole system. It works fine on open java.

* This file contains the records of 1000 simulated people in CSV format:
https://storage.googleapis.com/synthea-public/synthea_sample_data_csv_apr2020.zip

* This 1000 patient dataset is a sample from a bigger dataset which has records of 1M fake people: https://synthea.mitre.org/downloads.

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