greedy
Very fast greedy diffeomorphic registration code
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Download Latest Version (.zip)- compile.yml
- prebuild.sh
- GetGitRevisionDescription.cmake
- GetGitRevisionDescription.cmake.in
- FindFFTW.cmake
- GitBranch.cmake
- Package.cmake
- PYVersion.cmake
- custom.css
- greedy_usage_affine.txt
- stackg_usage_init.txt
- stackg_usage_main.txt
- stackg_usage_recon.txt
- stackg_usage_splat.txt
- stackg_usage_voladd.txt
- stackg_usage_voliter.txt
- stackg_usage_volmatch.txt
- about.rst
- advanced.rst
- conf.py
- index.rst
- install.rst
- Makefile
- quick_start.rst
- reference.rst
- depthmap.m
- fh20-cc-bigstudy009.png
- fh20-cc-bigstudy010.png
- runme.m
- ArmijoBacktrack.m
- autoGrad.m
- autoHess.m
- autoHv.m
- autoTensor.m
- conjGrad.m
- example_minFunc.m
- lbfgs.m
- lbfgsC.c
- lbfgsC.mexglx
- lbfgsC.mexmac
- lbfgsC.mexw32
- lbfgsUpdate.m
- mchol.m
- mcholC.c
- mcholC.mexw32
- mcholinc.m
- minFunc.m
- minFunc_processInputOptions.m
- minFuncBC.m
- minFuncEC.m
- minFuncIC.m
- polyinterp.m
- precondDiag.m
- precondTriu.m
- precondTriuDiag.m
- taylorModel.m
- WolfeLineSearch.m
- c_to_o_iteration_8.eps
- c_to_o_iteration_8.pdf
- c_to_o_iteration_8.png
- oh_to_cee_example.eps
- oh_to_cee_example_more_timesteps.eps
- Thumbs.db
- brain1.png
- brain2.png
- brain_checkerboard.png
- brain_fixed.png
- brain_moving.png
- circc_fixed.png
- circc_moving.png
- corpus.png
- diff_c.png
- diff_circ.png
- diff_circ2.png
- diff_i.png
- diff_o.png
- diff_objective.m
- diff_objective_gateux_deriv.m
- diff_objective_simple.m
- diffopmat.m
- diffopt.m
- diffplot.m
- elcallback.m
- elevolve.m
- elupdate.m
- expmap.m
- expmap_euler.m
- expmap_gateaux_deriv.m
- expmap_semi_lagrange.m
- generate_test_fft.m
- gridplot.m
- image_downsample.m
- image_upsample.m
- lddmm_basic.m
- lddmm_compose_diffeomorphisms.m
- lddmm_diff_variation.m
- lddmm_example_cee_to_circ.m
- lddmm_hilbert_dot_product.m
- lddmm_init.m
- lddmm_integrate_field_and_jacobian_semi_lagrangian.m
- lddmm_integrate_field_euler.m
- lddmm_integrate_field_semi_lagrangian.m
- lddmm_jacobian_determinant.m
- lddmm_objective_and_gateaux.m
- lddmm_objective_and_gradient.m
- lddmm_optimize.m
- lddmm_optimize_basic.m
- lddmm_optimize_lbgfs.m
- lddmm_phi_gateaux.m
- lddmm_phi_s_t.m
- lddmm_plot_field.m
- lddmm_plot_greens_function.m
- lddmm_plot_problem.asv
- lddmm_plot_problem.m
- lddmm_plot_problem_simple.m
- lddmm_random_field.m
- lddmm_register_multiscale.m
- lddmm_reparameterize_vector_field.m
- lddmm_resample_in_time.m
- lddmm_test_gradient.m
- lddmm_test_inverse_consistency.m
- lddmm_trivial_objective_and_gradient.m
- lddmm_vector_field_dot_product.m
- lddmm_warp_scalar_field.m
- mkgridimage.m
- normed_dot_product.m
- oval.png
- test_lddmm.m
- test_lddmm_brains.m
- test_lddmm_corpus.m
- testgateaux.m
- testinvmap.m
- warp.m
- compute_ncc.m
- compute_wncc.m
- ncc_test_feb2021.m
- weighted_ncc_test_feb2021.m
- .diff.swp
- .DS_Store
- greedy_build_template.sh
- pybatch.sh
- BinaryHeap.h
- ShortestPath.cxx
- ShortestPath.h
- CompositeImageNanMaskingFilter.h
- CompositeImageNanMaskingFilter.txx
- FastLinearInterpolator.h
- FastWarpCompositeImageFilter.h
- FastWarpCompositeImageFilter.txx
- ImageRegionConstIteratorWithIndexOverride.h
- itkSLICSuperVoxelImageFilter.h
- itkSLICSuperVoxelImageFilter.hxx
- itkVectorImageCentralDifferenceImageFunction.h
- itkVectorImageCentralDifferenceImageFunction.hxx
- JacobianDeterminantImageFilter.h
- JacobianDeterminantImageFilter.txx
- LieBracketFilter.h
- LieBracketFilter.hxx
- LinearTransformToWarpFilter.h
- LinearTransformToWarpFilter.txx
- MahalanobisDistanceToTargetWarpMetric.h
- MahalanobisDistanceToTargetWarpMetric.txx
- MultiComponentApproximateNCCImageMetric.h
- MultiComponentApproximateNCCImageMetric.txx
- MultiComponentImageMetricBase.h
- MultiComponentImageMetricBase.txx
- MultiComponentMetricReport.h
- MultiComponentMutualInfoImageMetric.h
- MultiComponentMutualInfoImageMetric.txx
- MultiComponentNCCImageMetric.h
- MultiComponentNCCImageMetric.txx
- MultiComponentQuantileBasedNormalizationFilter.h
- MultiComponentQuantileBasedNormalizationFilter.txx
- MultiComponentWeightedNCCImageMetric.h
- MultiComponentWeightedNCCImageMetric.txx
- MultiImageOpticalFlowImageFilter.h
- MultiImageOpticalFlowImageFilter.txx
- OneDimensionalInPlaceAccumulateFilter.h
- OneDimensionalInPlaceAccumulateFilter.txx
- ctpl_stl.h
- lmshoot_main.cxx
- lmtowarp_main.cxx
- PointSetGeodesicFlowUtil.cxx
- PointSetGeodesicShooting.cxx
- PointSetGeodesicShooting.h
- PointSetGeodesicToWarp.cxx
- PointSetGeodesicToWarp.h
- PointSetHamiltonianSystem.cxx
- PointSetHamiltonianSystem.h
- PointSetOptimalControlSystem.cxx
- PointSetOptimalControlSystem.h
- TestGeodesicShooting.cxx
- VTKArrays.h
- macf_fixed_point_inverse.cxx
- macf_gradient.cxx
- macf_objective_and_delta.cxx
- macf_objective_and_gradient.cxx
- macf_pyramid.cxx
- multichunk_greedy_main.cxx
- MultiChunkGreedy.cxx
- MultiChunkGreedy.h
- CMakeLists.txt
- greedy_propagation.md
- main.cxx
- PropagationAPI.cxx
- PropagationAPI.h
- PropagationCommon.hxx
- PropagationData.hxx
- PropagationInputBuilder.cxx
- PropagationInputBuilder.h
- PropagationIO.cxx
- PropagationIO.h
- PropagationParameters.hxx
- PropagationTools.h
- PropagationTools.txx
- CMakeLists.txt
- MKLSolverInterface.cxx
- MKLSolverInterface.h
- PardisoInterface.cxx
- PardisoInterface.h
- SparseMatrix.cxx
- SparseMatrix.h
- SparseMatrix.txx
- SparseSolver.cxx
- SparseSolver.h
- SparseSolverException.h
- TaucsInterface.cxx
- TaucsInterface.h
- pybind11
- GreedyPythonBindings.cxx
- AffineCostFunctions.cxx
- AffineCostFunctions.h
- AffineTransformUtilities.h
- CommandLineHelper.cxx
- CommandLineHelper.h
- DifferentiableScalingAndSquaring.cxx
- DifferentiableScalingAndSquaring.h
- greedy_main.cxx
- greedy_stack_reg.cxx
- GreedyAPI.cxx
- GreedyAPI.h
- GreedyException.h
- GreedyMeshIO.cxx
- GreedyMeshIO.h
- GreedyParameters.cxx
- GreedyParameters.h
- GreedyVersion.cxx.in
- lddmm_common.h
- lddmm_data.cxx
- lddmm_data.h
- lddmm_main.cxx
- lddmm_sparse.cxx
- macf_optimization.cxx
- MultiImageRegistrationHelper.cxx
- MultiImageRegistrationHelper.h
- template_make_average.cxx
- TetraMeshConstraints.cxx
- TetraMeshConstraints.h
- WarpFunctors.h
- test01_expected_result.nii.gz
- test01_input.nii.gz
- shoot_regression.mat
- shooting_test_2d_target.vtk
- shooting_test_2d_template.vtk
- shooting_test_3d_box.vtk
- shooting_test_3d_sphere.vtk
- shooting_test_3d_sphere_reduced.vtk
- img4d.nii.gz
- seg05.nii.gz
- seg05.nrrd
- seg4d_resliced.nii.gz
- phantoms.sh
- circle_nzbkg_fixed.nii.gz
- circle_nzbkg_init.mat
- circle_nzbkg_moving.nii.gz
- phantom01_fixed.nii.gz
- phantom01_mask.nii.gz
- phantom01_moving.nii.gz
- phantom01_readme.txt
- phantom01_rigid.mat
- phantom01_source.nii.gz
- phantom02_fixed.nii.gz
- phantom02_moving.nii.gz
- phantom03_fixed.nii.gz
- phantom03_moving.nii.gz
- r23_fixed.nii.gz
- r23_moving.nii.gz
- runpair.sh
- t1longi_2d_bl.nii.gz
- t1longi_2d_bl_mask.nii.gz
- t1longi_2d_fu.nii.gz
- t1longi_2d_fu_mask.nii.gz
- t1longi_2d_rigid.mat
- t1longi_2d_rigid_halfway.mat
- propagation_test.cxx
- greedy_multi_chunk.cxx
- GreedyTestDriver.cxx
- TestOneDimensionalInPlaceAccumulateFilter.cxx
- hexdump.c
- hexdump.h
- .clang-format
- .gitignore
- .gitmodules
- CMakeLists.txt
- Config.cmake.in
- CTestConfig.cmake
- LICENSE
- pyproject.toml
- README.md
// repository documentation
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