MIMIC

(★ 95)

MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.

파일 탐색기

최종 버전 다운로드 (.zip)

- - warn-on-main-pr.yml
- gcpt_drug_ndc.csv
- gcpt_drug_route.csv
- gcpt_meas_lab_loinc_mod.csv
- gcpt_obs_drgcodes.csv
- gcpt_proc_itemid.csv
- dev.etlconf
- full.etlconf
- workflow_ddl.conf
- workflow_etl.conf
- workflow_gen_scripts.conf
- workflow_metrics.conf
- workflow_qa.conf
- workflow_staging.conf
- workflow_unload.conf
- workflow_ut.conf
- workflow_vocabulary_refresh.conf
- bq_load_one_time.py
- d_items_to_concept.csv
- m_mapping_review_04_12.sql
- mapping_itemid_gap.sql
- reports_for_mapping.sql
- custom_mapping_list.tsv
- gcpt_cs_place_of_service.csv
- gcpt_drug_ndc.csv
- gcpt_drug_route.csv
- gcpt_meas_chartevents_main_mod.csv
- gcpt_meas_chartevents_value.csv
- gcpt_meas_lab_loinc_mod.csv
- gcpt_meas_unit.csv
- gcpt_meas_waveforms.csv
- gcpt_micro_antibiotic.csv
- gcpt_micro_microtest.csv
- gcpt_micro_organism.csv
- gcpt_micro_resistance.csv
- gcpt_micro_specimen.csv
- gcpt_mimic_generated.csv
- gcpt_obs_drgcodes.csv
- gcpt_obs_insurance.csv
- gcpt_obs_marital.csv
- gcpt_outputevents.csv
- gcpt_per_ethnicity.csv
- gcpt_proc_datetimeevents.csv
- gcpt_proc_itemid.csv
- gcpt_vis_admission.csv
- - ddl_cdm_5_3_1.sql
  - ddl_voc_5_3_1.sql
- - cdm_care_site.sql
  - cdm_cdm_source.sql
  - cdm_condition_era.sql
  - cdm_condition_occurrence.sql
  - cdm_death.sql
  - cdm_device_exposure.sql
  - cdm_dose_era.sql
  - cdm_drug_era.sql
  - cdm_drug_exposure.sql
  - cdm_fact_relationship.sql
  - cdm_finalize_person.sql
  - cdm_location.sql
  - cdm_measurement.sql
  - cdm_observation.sql
  - cdm_observation_period.sql
  - cdm_person.sql
  - cdm_procedure_occurrence.sql
  - cdm_provider.sql
  - cdm_specimen.sql
  - cdm_visit_detail.sql
  - cdm_visit_occurrence.sql
  - ext_d_itemid_to_concept.sql
  - lk_cond_diagnoses.sql
  - lk_drug.sql
  - lk_meas_chartevents.sql
  - lk_meas_labevents.sql
  - lk_meas_outputevents.sql
  - lk_meas_specimen.sql
  - lk_meas_unit.sql
  - lk_meas_waveform.sql
  - lk_observation.sql
  - lk_procedure.sql
  - lk_vis_part_1.sql
  - lk_vis_part_2.sql
- - st_core.sql
  - st_hosp.sql
  - st_icu.sql
  - st_waveform_poc_1.sql
  - st_waveform_poc_2.sql
  - st_waveform_poc_3.sql
  - voc_copy_to_target_dataset.sql
- - unload_to_atlas_2b_concepts.sql
  - unload_to_atlas_extra.sql
  - unload_to_atlas_gen.sql
- - export_from_bq.py
  - export_from_bq_achilles_results.conf
  - export_from_bq_demo.conf
  - load_to_bq.py
  - load_to_bq_demo.conf
  - README.md
- - gen_cdm_to_atlas.conf
  - gen_cdm_to_atlas.py
- bq_run_script.conf
- bq_run_script.py
- run_workflow.py
- wf_read.py
- - cdm_tables.conf
  - examples_bq.sql
  - examples_bq_upd.sql
  - me_concept_fields.conf
  - me_concept_fields_20210118.conf
  - me_gen_queries_from_conf.py
  - me_mapping_rate_from_conf.bak.sql
  - me_mapping_rate_from_conf.sql
  - me_persons_visits.sql
  - me_see_result_from_conf.sql
  - me_top100_from_conf.sql
  - me_tops_together_from_conf.sql
  - me_totals_from_conf.sql
  - README.md
  - tmp_top100.sql
- - cdm_tables.conf
  - metric_total_row_count.sql
  - qa_care_site.sql
  - qa_condition_occurrence.sql
  - qa_gen_queries.conf
  - qa_gen_queries.py
  - qa_person.sql
  - qa_person_from_iii.sql
  - qa_start.sql
  - qa_visit_detail.sql
  - qa_visit_occurrence.sql
- - gen_bq_ut_basic.conf
  - gen_bq_ut_basic.py
  - gen_bq_ut_basic_tmp.conf
  - README.md
  - ut_basic_gen.sql
  - ut_care_site.sql
  - ut_condition_occurrence.sql
  - ut_death.sql
  - ut_person.sql
  - ut_start.sql
  - ut_templates.sql
  - ut_visit_detail.sql
  - ut_visit_occurrence.sql
- - custom_mapping.csv
  - custom_mapping_list.tsv
- - concept.json
  - concept_ancestor.json
  - concept_class.json
  - concept_relationship.json
  - concept_synonym.json
  - custom_mapping.json
  - custom_mapping_req.json
  - domain.json
  - drug_strength.json
  - relationship.json
  - source_to_concept_map.json
  - vocabulary.json
- bq_run_script.py
- check_custom_loaded.sql
- create_voc_from_tmp.sql
- custom_concept_stats.sql
- custom_vocabularies.sql
- load_to_bq_vocab.py
- README.md
- vocabulary_check_bq.sql
- vocabulary_cleanup_bq.sql
- vocabulary_cleanup_bq_m.sql
- vocabulary_refresh.conf
- vocabulary_refresh.py
- z_refresh_results.sql
- - SignalMethods.pdf
- - readme.md
- README.md
- bq_load_mimiciii_custom_mapping.py
- bq_load_one_time.py
- bq_mimiciii_custom_mapping_00.sql
- copy_dataset_by_table.sh
- MIMIC 2.0 affected tables.sql
- OMOP CDM bigquery ddl.txt
- run mimiciv 2_0 2022-09-09.txt
- run mimiciv 2_0 2023-02-17.txt
- run_times.txt
- tmp_src_d_micro.sql
- UAT_issue_ventillator_mode.sql
LICENSE
MIMIC-IV_Scope_Approach.pdf
README.md
usage_notes.md

// repository documentation

Was this content helpful?

★ 0 (0 ratings)

MIMIC

파일 탐색기

오늘의 추천 프로젝트

Was this content helpful?

Recent Feedback

MIMIC

파일 탐색기

오늘의 추천 프로젝트

Was this content helpful?

Recent Feedback

Download README