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Competing Risks and Survival Analysis

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- - pr_doc_preview.yml
  - push_doc.yml
  - test.yml
- - empty_placeholder_to_avoid_sphinx_warning
  - seer_extract.png
  - seer_home.png
- - class.rst
  - function.rst
- announcement.html
- api.rst
- competing_risk_diagram.svg
- conf.py
- downloading_seer.rst
- index.rst
- install.rst
- make.bat
- Makefile
- plot_01_survival_analysis.py
- plot_02_marginal_cumulative_incidence_estimation.py
- plot_03_competing_risks.py
- plot_04_calibration_aj.py
- README.rst
- - __init__.py
  - _competing_weibull.py
  - _seer.py
- - __init__.py
  - _accuracy_in_time.py
  - _aj_calibration.py
  - _brier_score.py
  - _concordance_index.py
  - _km_calibration.py
- - __init__.py
  - test_acc_in_time.py
  - test_aj_calibration.py
  - test_cindex.py
  - test_ipcw.py
  - test_km_calibration.py
  - test_metrics.py
  - test_survival_boost.py
- __init__.py
- _ipcw.py
- _km_sampler.py
- _survival_boost.py
- utils.py
- VERSION.txt
.gitignore
.pre-commit-config.yaml
CHANGES.rst
LICENSE
noxfile.py
pyproject.toml
README.md

// repository documentation

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# HΛZΛRDOUS

Predictive Competing Risks and Survival Analysis.

[![Tests](https://github.com/soda-inria/hazardous/actions/workflows/test.yml/badge.svg)](https://github.com/soda-inria/hazardous/actions/workflows/test.yml)

## Installation and usage

Installation:
```
pip install hazardous
```

Then browse the [online documentation](https://soda-inria.github.io/hazardous/)
and run the `examples/` to get started.

## Development and testing

Install in "editable" mode in your current Python env (after a standard installation to install the dependencies):

```
pip install flit
pip install . -v
pip install -e ".[dev]" --no-build-isolation -v
pre-commit install
```

Run the tests with nox to test in an environment that matches exactly on
specific CI build, for instance:

```
nox -p 3.11 -s test_latest_from_pypi -r
```

The `-r` flag makes it possible to reuse an existing env.

You can also install the test dependencies in the current env and use `pytest`
directly with arbitrary command line arguments:

```
pip install -e ".[test]" --no-build-isolation -v
pytest -vl -x -k test_name_pattern
```

## Building the doc

Using `nox`:

```
nox -s doc -r
```

or manually:

```
pip install -e ".[doc]" --no-build-isolation -v
cd doc
make html
```

The resulting html files are generated under the `doc/_build` folder.

## Building a release

```
pip install build
python -m build
ls dist/
```

TODO: make it possible to automate a release using GitHub Actions for a given tag.

hazardous

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